Listening on http://127.0.0.1:36257

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Warning: Error in [: Can't subset rows with `filter`.
✖ Logical subscript `filter` must be size 1 or 24970, not 0.
  155: <Anonymous>
  154: signalCondition
  153: signal_abort
  152: cnd_signal
  151: <Anonymous>
  150: signalCondition
  149: signal_abort
  148: cnd_signal
  147: stop_indicator_size
  146: <Anonymous>
  145: vec_as_location
  142: vectbl_as_row_location
  141: vectbl_as_row_index
  140: [.tbl_df
  135: <reactive:autoQC01Long> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#156]
  119: autoQC01Long
  117: <reactive:autoQC01Variables> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#373]
  101: autoQC01Variables
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#708]
   96: func
   83: renderFunc
   82: output$autoQC01Variable
    1: runApp
Warning: Error in [: Can't subset rows with `filter`.
✖ Logical subscript `filter` must be size 1 or 24970, not 0.
  200: <Anonymous>
  199: stop
  198: autoQC01Long
  191: <reactive:autoQC01Data> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#161]
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: autoQC01Data
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#761]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp

r.squared;slope;intercept
comet filter length: 0
comet filter length: 60
r.squared;slope;intercept
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#581]
  96: func
  83: renderFunc
  82: output$fileOutput
   1: runApp
'ThermoFisher.CommonCore.BackgroundSubtraction.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  127: FUN
  126: .checkRawFileReaderDLLs
  125: .isAssemblyWorking
  124: rawrr::readFileHeader
  123: <reactive:rawFileHeader> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#232]
  107: rawFileHeader
  100: renderPrint [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#789]
   99: func
   83: renderFunc
   82: output$rawFileHeader
    1: runApp
'ThermoFisher.CommonCore.BackgroundSubtraction.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  127: FUN
  126: .checkRawFileReaderDLLs
  125: .isAssemblyWorking
  124: rawrr::readFileHeader
  123: <reactive:rawFileHeader> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#232]
  107: rawFileHeader
  100: renderPrint [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#789]
   99: func
   83: renderFunc
   82: output$rawFileHeader
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotTIC
    1: runApp
Warning: Error in [: Can't subset rows with `filter`.
✖ Logical subscript `filter` must be size 1 or 24970, not 0.
  155: <Anonymous>
  154: signalCondition
  153: signal_abort
  152: cnd_signal
  151: <Anonymous>
  150: signalCondition
  149: signal_abort
  148: cnd_signal
  147: stop_indicator_size
  146: <Anonymous>
  145: vec_as_location
  142: vectbl_as_row_location
  141: vectbl_as_row_index
  140: [.tbl_df
  135: <reactive:autoQC01Long> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#156]
  119: autoQC01Long
  117: <reactive:autoQC01Variables> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#373]
  101: autoQC01Variables
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#708]
   96: func
   83: renderFunc
   82: output$autoQC01Variable
    1: runApp
Warning: Error in [: Can't subset rows with `filter`.
✖ Logical subscript `filter` must be size 1 or 24970, not 0.
  200: <Anonymous>
  199: stop
  198: autoQC01Long
  191: <reactive:autoQC01Data> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#161]
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: autoQC01Data
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#761]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp

r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept


r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept


r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
comet filter length: 0
comet filter length: 45
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
comet filter length: 48
r.squared;slope;intercept


Execution halted
Warning message:
agg could not write to the given file