Listening on http://127.0.0.1:38821

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
input timeRange: 7776000 | timeMin: 2023-10-27 17:40:28.281495 | timeMax: 2023-11-17 16:40:28.282144 | timeDiff: 1814400.00064945
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 360
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-27 15:40:28.281 | timeMax: 2023-11-17 15:40:28.282 | timeDiff: 1814400.00100017
plot_click: p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
plot_click: p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
fn has changed to /srv/www/htdocs//p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
length = 3
Plotting chromatograms ...
cometTimes:1677 | 74659
comet filter length: 0
cometTimes:1677 | 74659
comet filter length: 24
cometTimes:3770 | 74659
comet filter length: 66
input timeRange: 7776000 | timeMin: 2023-09-29 15:40:50.031 | timeMax: 2023-11-17 15:40:28.282 | timeDiff: 4233578.25100017
cometTimes:3770 | 74659
comet filter length: 45
cometTimes:3770 | 74659
comet filter length: 138
cometTimes:3770 | 74659
comet filter length: 240
cometTimes:3770 | 74659
comet filter length: 312
autoQC01 module APEX long nrow: 432
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
plot_click: 
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
Warning: Removed 14 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 882
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 28 rows containing missing values (`geom_point()`).
cometTimes:3770 | 74659
comet filter length: 66
input timeRange: 7776000 | timeMin: 2023-10-27 17:53:53.089292 | timeMax: 2023-11-17 16:53:53.089916 | timeDiff: 1814400.00062442
autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 360
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-27 15:53:53.089 | timeMax: 2023-11-17 15:53:53.09 | timeDiff: 1814400.00099993
cometTimes:1677 | 74659
comet filter length: 0
cometTimes:1677 | 74659
comet filter length: 24
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
fn has changed to /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
length = 3
Plotting chromatograms ...
autoQC01 module APEX long nrow: 378
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 24 rows containing missing values (`geom_point()`).
plot_click: 
plot_click: p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
plot_click: p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
fn has changed to /srv/www/htdocs//p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
length = 3
Plotting chromatograms ...
autoQC01 module APEX long nrow: 504
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR
APEXAUC
Warning: Removed 24 rows containing missing values (`geom_point()`).
plot_click: p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
length = 4
Plotting chromatograms ...
autoQC01 module APEX long nrow: 630
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, GTFIIDPAAVIR
APEXAUC
Warning: Removed 26 rows containing missing values (`geom_point()`).
plot_click: p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
length = 5
Plotting chromatograms ...
autoQC01 module APEX long nrow: 756
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, GTFIIDPAAVIR, YILAGVENSK
APEXAUC
Warning: Removed 28 rows containing missing values (`geom_point()`).
plot_click: p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
length = 6
Plotting chromatograms ...
autoQC01 module APEX long nrow: 882
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, GTFIIDPAAVIR, YILAGVENSK, GAGSSEPVTGLDAK
APEXAUC
Warning: Removed 30 rows containing missing values (`geom_point()`).
plot_click: p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/QEXACTIVE_1/analytic_20231110/20231110_C33171_010_autoQC01.raw
length = 7
Plotting chromatograms ...
input timeRange: 7776000 | timeMin: 2023-09-30 15:53:56.502 | timeMax: 2023-11-17 15:53:53.09 | timeDiff: 4147196.58799982
autoQC01 module APEX long nrow: 1890
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, GTFIIDPAAVIR, YILAGVENSK, GAGSSEPVTGLDAK
APEXAUC
Warning: Removed 90 rows containing missing values (`geom_point()`).
Warning: Removed 90 rows containing missing values (`geom_point()`).
Warning: Removed 90 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-27 18:03:03.027774 | timeMax: 2023-11-17 17:03:03.028373 | timeDiff: 1814400.00059938
autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 360
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-27 16:03:03.028 | timeMax: 2023-11-17 16:03:03.028 | timeDiff: 1814400
plot_click: p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
plot_click: p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
fn has changed to /srv/www/htdocs//p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
length = 3
Plotting chromatograms ...
cometTimes:1677 | 74659
comet filter length: 0
cometTimes:1677 | 74659
comet filter length: 24
input timeRange: 7776000 | timeMin: 2023-10-27 18:04:58.629891 | timeMax: 2023-11-17 17:04:58.630511 | timeDiff: 1814400.00062037
autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 360
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-27 16:04:58.63 | timeMax: 2023-11-17 16:04:58.631 | timeDiff: 1814400.00099993
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
plot_click: p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
length = 4
Plotting chromatograms ...
autoQC01 module APEX long nrow: 600
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, DGLDAASYYAPVR
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
Reading raw file: /srv/www/htdocs//p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
length = 5
Plotting chromatograms ...
input timeRange: 7776000 | timeMin: 2023-10-14 16:03:06.396 | timeMax: 2023-11-17 16:03:03.028 | timeDiff: 2937596.63200021
autoQC01 module APEX long nrow: 930
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, DGLDAASYYAPVR
APEXAUC
Warning: Removed 26 rows containing missing values (`geom_point()`).
Warning: Removed 26 rows containing missing values (`geom_point()`).
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
length = 5
Plotting chromatograms ...
Plotting chromatograms ...
Plotting chromatograms ...
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
length = 5
Plotting chromatograms ...
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
length = 5
Plotting chromatograms ...
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
fn has changed to /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
length = 5
Plotting chromatograms ...
autoQC01 module APEX long nrow: 1035
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, DGLDAASYYAPVR
APEXAUC
Warning: Removed 16 rows containing missing values (`geom_point()`).
plot_click: 
input timeRange: 7776000 | timeMin: 2023-11-02 16:08:22.632 | timeMax: 2023-11-17 16:03:03.028 | timeDiff: 1295680.39600015
autoQC01 module APEX long nrow: 375
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, DGLDAASYYAPVR
APEXAUC
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
input timeRange: 7776000 | timeMin: 2023-11-12 16:10:03.237 | timeMax: 2023-11-17 16:03:03.028 | timeDiff: 431579.791000128
autoQC01 module APEX long nrow: 150
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, DGLDAASYYAPVR
APEXAUC
Warning: Removed 2 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-05 16:10:24.873 | timeMax: 2023-11-17 16:03:03.028 | timeDiff: 1036358.15500021
autoQC01 module APEX long nrow: 255
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, DGLDAASYYAPVR
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw | plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw | plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw | plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw | plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw | plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw | plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw
fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw
Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01_20231114095451.raw
length = 5
Plotting chromatograms ...
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01.raw
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_001_autoQC01.raw
length = 5
Plotting chromatograms ...
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw
length = 5
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw | plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_004_autoQC01.raw
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw | plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_004_autoQC01.raw
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw | plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_004_autoQC01.raw
plot_click: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231116/20231116_001_autoQC01.raw | plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_004_autoQC01.raw
plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_001_autoQC01.raw
plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_001_autoQC01.raw
length = 5
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_001_autoQC01.raw
plot_click: p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_031_autoQC01.raw
plot_click: p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_031_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_031_autoQC01.raw
length = 5
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_031_autoQC01.raw
plot_click: p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_001_autoQC01.raw
plot_click: p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_001_autoQC01.raw
length = 5
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_001_autoQC01.raw
cometTimes:975 | 74659
comet filter length: 15
cometTimes:3653 | 74659
comet filter length: 45
input timeRange: 7776000 | timeMin: 2023-10-03 16:12:18.696 | timeMax: 2023-11-17 16:03:03.028 | timeDiff: 3887444.33200002
cometTimes:5265 | 74659
comet filter length: 63
input timeRange: 7776000 | timeMin: 2023-09-05 16:12:22.451 | timeMax: 2023-11-17 16:03:03.028 | timeDiff: 6306640.57700014


Execution halted