Listening on http://127.0.0.1:38857 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawrr input timeRange: 7776000 | timeMin: 2023-10-28 09:30:04.145387 | timeMax: 2023-11-18 08:30:04.146033 | timeDiff: 1814400.00064659 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save autoQC01 module APEX wide nrow: 244585 autoQC01 module APEX long nrow: 360 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-10-28 07:30:04.145 | timeMax: 2023-11-18 07:30:04.146 | timeDiff: 1814400.00099993 cometTimes:1638 | 74724 comet filter length: 0 cometTimes:1638 | 74724 comet filter length: 24 cometTimes:1638 | 74724 comet filter length: 42 cometTimes:702 | 74724 comet filter length: 24 input timeRange: 7776000 | timeMin: 2023-11-08 07:30:16.747 | timeMax: 2023-11-18 07:30:04.146 | timeDiff: 863987.398999929 cometTimes:702 | 74724 comet filter length: 48 cometTimes:702 | 74724 comet filter length: 0 cometTimes:702 | 74724 comet filter length: 0 cometTimes:702 | 74724 comet filter length: 24 autoQC01 module APEX long nrow: 81 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 144 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw plot_click: plot_click: fn has changed to /srv/www/htdocs//NA plot_click: plot_click: plot_click: plot_click: plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw length = 3 Plotting chromatograms ... Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw length = 3 Plotting chromatograms ... Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw length = 3 Plotting chromatograms ... Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw length = 3 Plotting chromatograms ... Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw length = 3 Plotting chromatograms ... Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw length = 3 Plotting chromatograms ... Plotting chromatograms ... plot_click: plot_click: fn has changed to /srv/www/htdocs//NA plot_click: plot_click: plot_click: plot_click: input timeRange: 7776000 | timeMin: 2023-10-28 09:34:29.510134 | timeMax: 2023-11-18 08:34:29.510807 | timeDiff: 1814400.00067234 autoQC01 module APEX wide nrow: 244585 autoQC01 module APEX long nrow: 360 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-10-28 07:34:29.51 | timeMax: 2023-11-18 07:34:29.511 | timeDiff: 1814400.00099993 plot_click: plot_click: fn has changed to /srv/www/htdocs//NA plot_click: plot_click: input timeRange: 7776000 | timeMin: 2023-10-28 09:34:43.955709 | timeMax: 2023-11-18 08:34:43.956316 | timeDiff: 1814400.00060678 autoQC01 module APEX wide nrow: 244585 autoQC01 module APEX long nrow: 360 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-10-28 07:34:43.956 | timeMax: 2023-11-18 07:34:43.956 | timeDiff: 1814400 plot_click: plot_click: fn has changed to /srv/www/htdocs//NA plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw length = 3 Plotting chromatograms ... plot_click: plot_click: fn has changed to /srv/www/htdocs//NA plot_click: plot_click: plot_click: plot_click: plot_click: plot_click: plot_click: plot_click: plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw length = 3 Plotting chromatograms ... autoQC01 module APEX long nrow: 1224 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 34 rows containing missing values (`geom_point()`). plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw input timeRange: 7776000 | timeMin: 2023-09-07 07:34:47.487 | timeMax: 2023-11-18 07:34:43.956 | timeDiff: 6220796.4690001 Warning: Removed 34 rows containing missing values (`geom_point()`). Warning: Removed 34 rows containing missing values (`geom_point()`). Warning: Removed 34 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1224 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 34 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-05 07:35:22.196 | timeMax: 2023-11-16 07:35:18.665 | timeDiff: 6220796.46899986 autoQC01 module APEX long nrow: 1224 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 34 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-05 07:37:45.65 | timeMax: 2023-11-16 07:35:18.665 | timeDiff: 6220653.01499987 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 07:37:48.1234 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220799.99959993 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 09:37:51.234326 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220796.88867426 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 07:37:51.234 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220796.88899994 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 09:37:52.921942 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220795.20105767 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 07:37:52.922 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220795.20099998 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 09:37:54.70873 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220793.41427016 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 07:37:54.709 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220793.4139998 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 09:37:56.380307 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220791.74269247 autoQC01 module APEX long nrow: 1224 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 34 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-07 07:37:57.447 | timeMax: 2023-11-18 07:37:52.64757 | timeDiff: 6220795.20057011 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 07:37:56.38 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220791.74299979 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 09:37:58.508662 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220789.6143384 autoQC01 module APEX long nrow: 1224 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 34 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-07 07:37:57.447 | timeMax: 2023-11-18 07:37:52.648 | timeDiff: 6220795.20099998 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 07:37:58.509 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220789.61399984 autoQC01 module APEX long nrow: 1170 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC Warning: Removed 32 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-08-20 09:38:00.708422 | timeMax: 2023-10-31 07:37:48.123 | timeDiff: 6220787.4145782 Execution halted