Listening on http://127.0.0.1:36795

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
input timeRange: 7776000 | timeMin: 2023-10-29 16:54:24.45344 | timeMax: 2023-11-19 16:54:24.454087 | timeDiff: 1814400.00064731
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 342
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-29 15:54:24.453 | timeMax: 2023-11-19 15:54:24.454 | timeDiff: 1814400.00099993
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
fn has changed to /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
plot_click: p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
fn has changed to /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
fn has changed to /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
length = 3
Plotting chromatograms ...
Reading raw file: /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
length = 3
Plotting chromatograms ...
Reading raw file: /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
length = 3
Plotting chromatograms ...
autoQC01 module APEX long nrow: 333
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
plot_click: 
Warning: Removed 14 rows containing missing values (`geom_point()`).
plot_click: p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_001_autoQC01.raw
plot_click: p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_001_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_010_autoQC01.raw
plot_click: p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_010_autoQC01.raw
fn has changed to /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_010_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_010_autoQC01.raw
length = 3
Plotting chromatograms ...
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
plot_click: p30240/Proteomics/EXPLORIS_1/gomal_20231030_diluted/20231030_013_autoQC01.raw | plot_click: p30240/Proteomics/EXPLORIS_1/gomal_20231030_diluted/20231030_013_autoQC01.raw
plot_click: p30240/Proteomics/EXPLORIS_1/gomal_20231030_diluted/20231030_013_autoQC01.raw | plot_click: p30240/Proteomics/EXPLORIS_1/gomal_20231030_diluted/20231030_013_autoQC01.raw
fn has changed to /srv/www/htdocs//p30240/Proteomics/EXPLORIS_1/gomal_20231030_diluted/20231030_013_autoQC01.raw
Reading raw file: /srv/www/htdocs//p30240/Proteomics/EXPLORIS_1/gomal_20231030_diluted/20231030_013_autoQC01.raw
length = 3
Plotting chromatograms ...
autoQC01 module APEX long nrow: 369
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 24 rows containing missing values (`geom_point()`).
plot_click: 
plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33297_005_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33297_005_autoQC01.raw | plot_click: p33326/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33326_006_autoQC01.raw
plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33297_005_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33297_005_autoQC01.raw | plot_click: p33326/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33326_006_autoQC01.raw
fn has changed to /srv/www/htdocs//p33297/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33297_005_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33297/Proteomics/QEXACTIVE_1/analytic_20231107/20231107_C33297_005_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw
plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw
length = 3
Plotting chromatograms ...
Warning: Error in lm.wfit: 0 (non-NA) cases
  176: stop
  175: lm.wfit
  174: lm
  173: .fitChromatographicPeak
  172: FUN
  171: lapply
  170: .fitPeak.rawrrChromatogram
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-rawrr01-plotProfiles
    1: runApp
plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_001_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_006_autoQC01.raw
plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_001_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_006_autoQC01.raw
fn has changed to /srv/www/htdocs//p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_001_autoQC01.raw
length = 3
Plotting chromatograms ...
plot_click: p3000/Proteomics/QEXACTIVE_1/analytic_20231114/20231114_C3000_003_autoQC01.raw
plot_click: p3000/Proteomics/QEXACTIVE_1/analytic_20231114/20231114_C3000_003_autoQC01.raw
fn has changed to /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20231114/20231114_C3000_003_autoQC01.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20231114/20231114_C3000_003_autoQC01.raw
length = 3
Plotting chromatograms ...
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
plot_click: p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_008_autoQC01.raw
plot_click: p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_008_autoQC01.raw
fn has changed to /srv/www/htdocs//p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_008_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_008_autoQC01.raw
length = 3
Plotting chromatograms ...
Reading raw file: /srv/www/htdocs//p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_008_autoQC01.raw
length = 3
Plotting chromatograms ...