Listening on http://127.0.0.1:41621

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
input timeRange: 7776000 | timeMin: 2023-10-29 20:46:50.140443 | timeMax: 2023-11-19 20:46:50.141615 | timeDiff: 1814400.0011723
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 342
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-29 19:46:50.14 | timeMax: 2023-11-19 19:46:50.142 | timeDiff: 1814400.00199986
Warning: The following named parsers don't match the column names: Time, Size, Precursors.Identified, Proteins.Identified
Warning: Unknown or uninitialised column: `File.Name`.
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  156: <Anonymous>
  155: signalCondition
  154: signal_abort
  153: cnd_signal
  152: <Anonymous>
  151: signalCondition
  150: signal_abort
  149: cnd_signal
  148: stop_indicator_size
  147: <Anonymous>
  146: vec_as_location
  143: vectbl_as_row_location
  142: vectbl_as_row_index
  141: [.tbl_df
  137: <reactive:diannWide> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#214]
  121: diannWide
  114: <reactive:diannLong> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#223]
   98: diannLong
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#381]
   96: func
   83: renderFunc
   82: output$diannTimeSlider
    1: runApp
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  126: <Anonymous>
  125: stop
  124: diannLong
  117: <reactive:diannVariables> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#235]
  101: diannVariables
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#435]
   96: func
   83: renderFunc
   82: output$diannVariable
    1: runApp
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  200: <Anonymous>
  199: stop
  198: diannLong
  191: <reactive:diannData> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#243]
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: diannData
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#662]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
input timeRange: 7776000 | timeMin: 2023-10-29 20:47:48.052922 | timeMax: 2023-11-19 20:47:48.053837 | timeDiff: 1814400.00091457
autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 342
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-29 19:47:48.053 | timeMax: 2023-11-19 19:47:48.054 | timeDiff: 1814400.00099993
Warning: The following named parsers don't match the column names: Time, Size, Precursors.Identified, Proteins.Identified
Warning: Unknown or uninitialised column: `File.Name`.
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  156: <Anonymous>
  155: signalCondition
  154: signal_abort
  153: cnd_signal
  152: <Anonymous>
  151: signalCondition
  150: signal_abort
  149: cnd_signal
  148: stop_indicator_size
  147: <Anonymous>
  146: vec_as_location
  143: vectbl_as_row_location
  142: vectbl_as_row_index
  141: [.tbl_df
  137: <reactive:diannWide> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#214]
  121: diannWide
  114: <reactive:diannLong> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#223]
   98: diannLong
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#381]
   96: func
   83: renderFunc
   82: output$diannTimeSlider
    1: runApp
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  126: <Anonymous>
  125: stop
  124: diannLong
  117: <reactive:diannVariables> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#235]
  101: diannVariables
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#435]
   96: func
   83: renderFunc
   82: output$diannVariable
    1: runApp
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  200: <Anonymous>
  199: stop
  198: diannLong
  191: <reactive:diannData> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#243]
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: diannData
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#662]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
input timeRange: 7776000 | timeMin: 2023-10-29 20:48:05.466948 | timeMax: 2023-11-19 20:48:05.468282 | timeDiff: 1814400.00133324
autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 342
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-29 19:48:05.467 | timeMax: 2023-11-19 19:48:05.468 | timeDiff: 1814400.00099993
cometTimes:1794 | 74893
comet filter length: 0
cometTimes:1794 | 74893
comet filter length: 21
Warning: The following named parsers don't match the column names: Time, Size, Precursors.Identified, Proteins.Identified
Warning: Unknown or uninitialised column: `File.Name`.
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  156: <Anonymous>
  155: signalCondition
  154: signal_abort
  153: cnd_signal
  152: <Anonymous>
  151: signalCondition
  150: signal_abort
  149: cnd_signal
  148: stop_indicator_size
  147: <Anonymous>
  146: vec_as_location
  143: vectbl_as_row_location
  142: vectbl_as_row_index
  141: [.tbl_df
  137: <reactive:diannWide> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#214]
  121: diannWide
  114: <reactive:diannLong> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#223]
   98: diannLong
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#381]
   96: func
   83: renderFunc
   82: output$diannTimeSlider
    1: runApp
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  126: <Anonymous>
  125: stop
  124: diannLong
  117: <reactive:diannVariables> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#235]
  101: diannVariables
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#435]
   96: func
   83: renderFunc
   82: output$diannVariable
    1: runApp
Warning: Error in [: Can't subset rows with `grepl(input$regex, S$File.Name)`.
✖ Logical subscript `grepl(input$regex, S$File.Name)` must be size 1 or 2, not 0.
  200: <Anonymous>
  199: stop
  198: diannLong
  191: <reactive:diannData> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#243]
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: diannData
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#662]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
input timeRange: 7776000 | timeMin: 2023-10-29 20:50:03.044511 | timeMax: 2023-11-19 20:50:03.045575 | timeDiff: 1814400.00106454
autoQC01 module APEX wide nrow: 244585
autoQC01 module APEX long nrow: 342
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 8 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-29 19:50:03.045 | timeMax: 2023-11-19 19:50:03.046 | timeDiff: 1814400.00099993
autoQC01 module APEX long nrow: 252
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 24 rows containing missing values (`geom_point()`).
plot_click: p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_007_autoQC01.raw
plot_click: p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_007_autoQC01.raw
fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_007_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_007_autoQC01.raw
length = 3
Plotting chromatograms ...


Execution halted