Listening on http://127.0.0.1:38395
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-10-31 14:20:00.500249 | timeMax: 2023-11-21 14:20:00.501232 | timeDiff: 1814400.00098276
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

input timeRange: 7776000 | timeMin: 2023-10-31 13:20:00.5 | timeMax: 2023-11-21 13:20:00.501 | timeDiff: 1814400.00099993
nrow dataFiltered(): 0
nrow dataFiltered(): 91
autoQC01 module APEX wide nrow: 489214
autoQC01 module APEX long nrow: 792
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-10-31 14:32:53.360175 | timeMax: 2023-11-21 14:32:53.36078 | timeDiff: 1814400.00060439
input timeRange: 7776000 | timeMin: 2023-10-31 13:32:53.36 | timeMax: 2023-11-21 13:32:53.361 | timeDiff: 1814400.00100017
nrow dataFiltered(): 0
nrow dataFiltered(): 91
nrow dataFiltered(): 208
nrow dataFiltered(): 72
nrow dataFiltered(): 416
nrow dataFiltered(): 72
Warning: Error in : '/scratch/DIAQC/qc/dump/autoQC01.csv' does not exist.
  164: stop
  163: check_path
  162: <Anonymous>
  161: vroom_
  160: vroom::vroom
  159: readr::read_delim
  158: <reactive>
  142: autoQC01wide
  135: <reactive>
  119: autoQC01Long
  117: <reactive>
  101: autoQC01Variables
   97: renderUI
   96: func
   83: renderFunc
   82: output$autoQC01-autoQC01Variable
    1: runApp
Warning: Error in : '/scratch/DIAQC/qc/dump/autoQC01.csv' does not exist.
  200: <Anonymous>
  199: stop
  198: autoQC01Long
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: dataPeptideFit
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-autoQC01Plot
    1: runApp
Warning: Error in : '/scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt' does not exist.
  216: stop
  215: check_path
  214: <Anonymous>
  213: vroom_
  212: vroom::vroom
  211: readr::read_delim
  210: <reactive>
  208: .func
  205: contextFunc
  204: env$runWith
  197: ctx$run
  196: self$.updateValue
  194: autoQC01APEXwide
  187: <reactive>
  185: .func
  182: contextFunc
  181: env$runWith
  174: ctx$run
  173: self$.updateValue
  171: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-auc
    1: runApp
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-10-31 14:56:17.129431 | timeMax: 2023-11-21 14:56:17.130036 | timeDiff: 1814400.00060534
input timeRange: 7776000 | timeMin: 2023-10-31 13:56:17.129 | timeMax: 2023-11-21 13:56:17.13 | timeDiff: 1814400.00100017
nrow dataFiltered(): 0
nrow dataFiltered(): 91
Warning: Error in : '/scratch/DIAQC/qc/dump/autoQC01.csv' does not exist.
  164: stop
  163: check_path
  162: <Anonymous>
  161: vroom_
  160: vroom::vroom
  159: readr::read_delim
  158: <reactive>
  142: autoQC01wide
  135: <reactive>
  119: autoQC01Long
  117: <reactive>
  101: autoQC01Variables
   97: renderUI
   96: func
   83: renderFunc
   82: output$autoQC01-autoQC01Variable
    1: runApp
Warning: Error in : '/scratch/DIAQC/qc/dump/autoQC01.csv' does not exist.
  200: <Anonymous>
  199: stop
  198: autoQC01Long
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: dataPeptideFit
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-autoQC01Plot
    1: runApp
autoQC01 module APEX wide nrow: 252043
autoQC01 module APEX long nrow: 444
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 4 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
Warning: Error in : '/scratch/DIAQC/qc/dump/autoQC01.csv' does not exist.
  144: <Anonymous>
  143: stop
  142: autoQC01wide
  135: <reactive>
  119: autoQC01Long
  117: <reactive>
  101: autoQC01Variables
   97: renderUI
   96: func
   83: renderFunc
   82: output$autoQC01-autoQC01Variable
    1: runApp
Warning: Error in : '/scratch/DIAQC/qc/dump/autoQC01.csv' does not exist.
  200: <Anonymous>
  199: stop
  198: autoQC01Long
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: dataPeptideFit
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-autoQC01Plot
    1: runApp
autoQC01 module APEX long nrow: 420
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 16 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
plot_click: p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_002_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_003_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_003_autoQC01.raw
plot_click: p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_002_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_003_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_003_autoQC01.raw
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Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_002_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
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input timeRange: 7776000 | timeMin: 2023-10-31 15:07:17.810947 | timeMax: 2023-11-21 15:07:17.811558 | timeDiff: 1814400.00061035
input timeRange: 7776000 | timeMin: 2023-10-31 14:07:17.811 | timeMax: 2023-11-21 14:07:17.812 | timeDiff: 1814400.00099993
nrow dataFiltered(): 0
nrow dataFiltered(): 91
nrow dataFiltered(): 91
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
nrow dataFiltered(): 299
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-09-23 14:07:18.192 | timeMax: 2023-11-21 14:07:17.812 | timeDiff: 5097599.62000012
autoQC01 module APEX wide nrow: 252043
autoQC01 module APEX long nrow: 1224
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
input timeRange: 31536000 | timeMin: 2023-09-23 14:07:18.192 | timeMax: 2023-11-21 15:09:09.215465 | timeDiff: 5097711.02346468
autoQC01 module APEX long nrow: 1224
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
input timeRange: 31536000 | timeMin: 2023-09-23 14:07:18.192 | timeMax: 2023-11-21 14:09:09.215 | timeDiff: 5097711.023
autoQC01 module APEX long nrow: 1224
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 6384
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 62 rows containing missing values (`geom_point()`).
input timeRange: 31536000 | timeMin: 2022-12-07 14:09:09.979 | timeMax: 2023-11-21 14:09:09.215 | timeDiff: 30153599.2359998
autoQC01 module APEX long nrow: 5760
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 100 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 5964
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 184 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 5964
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
AUC.lg2
Warning: Removed 92 rows containing missing values (`geom_point()`).
plot_click: p31501/Proteomics/QEXACTIVE_1/analytic_20230418/20230418_C31501_001_autoQC01_rep.raw
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Reading raw file: /srv/www/htdocs//p31501/Proteomics/QEXACTIVE_1/analytic_20230418/20230418_C31501_001_autoQC01_rep.raw
length = 3
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 5964
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
AUC.lg2APEX
Warning: Removed 184 rows containing missing values (`geom_point()`).
plot_click: p31501/Proteomics/QEXACTIVE_1/analytic_20230418/20230418_C31501_001_autoQC01_rep.raw
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Reading raw file: /srv/www/htdocs//p31182/Proteomics/QEXACTIVE_1/analytic_20230321/20230321_C31182_001_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
Plotting chromatograms ...
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Plotting chromatograms ...
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Plotting chromatograms ...
plot_click: 
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plot_click: p33016/Proteomics/QEXACTIVE_1/analytic_20231005/20231005_C33016_001r_autoQC01.raw | plot_click: p33046/Proteomics/QEXACTIVE_1/analytic_20231006/20231006_C33046_001_autoQC01.raw | plot_click: p33016/Proteomics/QEXACTIVE_1/analytic_20231005/20231005_C33016_001_autoQC01.raw | plot_click: p33069/Proteomics/QEXACTIVE_1/analytic_20231006/20231006_C33069_001_autoQC01.raw | plot_click: p33073/Proteomics/QEXACTIVE_1/analytic_20231006/20231006_C33073_001_autoQC01.raw
plot_click: p33016/Proteomics/QEXACTIVE_1/analytic_20231005/20231005_C33016_001r_autoQC01.raw | plot_click: p33046/Proteomics/QEXACTIVE_1/analytic_20231006/20231006_C33046_001_autoQC01.raw | plot_click: p33016/Proteomics/QEXACTIVE_1/analytic_20231005/20231005_C33016_001_autoQC01.raw | plot_click: p33069/Proteomics/QEXACTIVE_1/analytic_20231006/20231006_C33069_001_autoQC01.raw | plot_click: p33073/Proteomics/QEXACTIVE_1/analytic_20231006/20231006_C33073_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33016/Proteomics/QEXACTIVE_1/analytic_20231005/20231005_C33016_001r_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33016/Proteomics/QEXACTIVE_1/analytic_20231005/20231005_C33016_001r_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
plot_click: p32954/Proteomics/QEXACTIVE_1/analytic_20230925/20230925_C32954_001_autoQC01.raw | plot_click: p32927/Proteomics/QEXACTIVE_1/analytic_20230922/20230922_C32927_001_autoQC01.raw | plot_click: p32927/Proteomics/QEXACTIVE_1/analytic_20230922/20230922_C32927_004_autoQC01.raw | plot_click: p32930/Proteomics/QEXACTIVE_1/analytic_20230921/20230921_C32930_008_autoQC01_1_20230922120847.raw | plot_click: p32954/Proteomics/QEXACTIVE_1/analytic_20230925/20230925_C32954_006_autoQC01.raw
plot_click: p32954/Proteomics/QEXACTIVE_1/analytic_20230925/20230925_C32954_001_autoQC01.raw | plot_click: p32927/Proteomics/QEXACTIVE_1/analytic_20230922/20230922_C32927_001_autoQC01.raw | plot_click: p32927/Proteomics/QEXACTIVE_1/analytic_20230922/20230922_C32927_004_autoQC01.raw | plot_click: p32930/Proteomics/QEXACTIVE_1/analytic_20230921/20230921_C32930_008_autoQC01_1_20230922120847.raw | plot_click: p32954/Proteomics/QEXACTIVE_1/analytic_20230925/20230925_C32954_006_autoQC01.raw
fn has changed to /srv/www/htdocs//p32954/Proteomics/QEXACTIVE_1/analytic_20230925/20230925_C32954_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p32954/Proteomics/QEXACTIVE_1/analytic_20230925/20230925_C32954_001_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw | plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_009_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_006_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_006_autoQC01.raw | plot_click: p33220/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33220_001_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_001_autoQC01.raw | plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_001_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01_20231031171432.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_010_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_005_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_019_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_005_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw
plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw | plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_009_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_006_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_006_autoQC01.raw | plot_click: p33220/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33220_001_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_001_autoQC01.raw | plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_001_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01_20231031171432.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_010_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_005_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_019_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_005_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 5964
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
AUC.lg2
Warning: Removed 92 rows containing missing values (`geom_point()`).
plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw | plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_009_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_006_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_006_autoQC01.raw | plot_click: p33220/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33220_001_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01.raw | plot_click: p33257/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33257_001_autoQC01.raw | plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231101/20231101_C33281_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_001_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01_20231031171432.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_010_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_005_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw | plot_click: p33297/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33297_004_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_001_autoQC01.raw | plot_click: p33310/Proteomics/QEXACTIVE_1/analytic_20231102/20231102_C33310_019_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_005_autoQC01.raw | plot_click: p33272/Proteomics/QEXACTIVE_1/analytic_20231031/20231031_C33272_001_autoQC01.raw | plot_click: p33264/Proteomics/QEXACTIVE_1/analytic_20231030/20231030_C33264_001_autoQC01.raw
autoQC01 module APEX long nrow: 5964
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
AUC.lg2AUC
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