Listening on http://127.0.0.1:45953
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-10-31 22:24:17.381332 | timeMax: 2023-11-21 22:24:17.38198 | timeDiff: 1814400.00064778
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

input timeRange: 7776000 | timeMin: 2023-10-31 21:24:17.381 | timeMax: 2023-11-21 21:24:17.382 | timeDiff: 1814400.00099993
nrow dataFiltered(): 0
nrow dataFiltered(): 104
autoQC01 module APEX wide nrow: 252043
autoQC01 module APEX long nrow: 432
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 2 rows containing missing values (`geom_point()`).
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_039_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_039_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_039_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_039_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
plot_click: 
plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231106/20231106_C33281_001_autoQC01.raw
plot_click: p33281/Proteomics/QEXACTIVE_1/analytic_20231106/20231106_C33281_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/QEXACTIVE_1/analytic_20231106/20231106_C33281_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/QEXACTIVE_1/analytic_20231106/20231106_C33281_001_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 1524
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 76 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-09-01 21:25:12.264 | timeMax: 2023-11-21 21:24:17.382 | timeDiff: 6998345.11800003
plot_click: p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_010_autoQC01.raw | plot_click: p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_001_autoQC01.raw
plot_click: p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_010_autoQC01.raw | plot_click: p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_010_autoQC01.raw
Reading raw file: /srv/www/htdocs//p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_010_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 2032
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK
APEXAUC.lg2
Warning: Removed 80 rows containing missing values (`geom_point()`).
plot_click: p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_010_autoQC01.raw | plot_click: p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p32831/Proteomics/QEXACTIVE_1/analytic_20230908/20230908_C32831_010_autoQC01.raw
length = 4
Plotting chromatograms ...
plot_click: p33015/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33015_004_autoQC01.raw | plot_click: p32865/Proteomics/QEXACTIVE_1/analytic_20231012/20231012_C32865_001_autoQC01.raw | plot_click: p33015/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33015_001_autoQC01.raw
plot_click: p33015/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33015_004_autoQC01.raw | plot_click: p32865/Proteomics/QEXACTIVE_1/analytic_20231012/20231012_C32865_001_autoQC01.raw | plot_click: p33015/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33015_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33015/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33015_004_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33015/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33015_004_autoQC01.raw
length = 4
Plotting chromatograms ...
plot_click: p32861/Proteomics/QEXACTIVE_1/analytic_20230913/20230913_C32861_002_autoQC01.raw | plot_click: p32718/Proteomics/QEXACTIVE_1/tobiasko_20230913/20230913_001_autoQC01.raw
plot_click: p32861/Proteomics/QEXACTIVE_1/analytic_20230913/20230913_C32861_002_autoQC01.raw | plot_click: p32718/Proteomics/QEXACTIVE_1/tobiasko_20230913/20230913_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p32861/Proteomics/QEXACTIVE_1/analytic_20230913/20230913_C32861_002_autoQC01.raw
Reading raw file: /srv/www/htdocs//p32861/Proteomics/QEXACTIVE_1/analytic_20230913/20230913_C32861_002_autoQC01.raw
length = 4
Plotting chromatograms ...
autoQC01 module APEX long nrow: 2000
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK
APEXAUC.lg2
Warning: Removed 38 rows containing missing values (`geom_point()`).
plot_click: p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_034_autoQC01.raw
plot_click: p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_034_autoQC01.raw
fn has changed to /srv/www/htdocs//p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_034_autoQC01.raw
Reading raw file: /srv/www/htdocs//p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_034_autoQC01.raw
length = 4
Plotting chromatograms ...
plot_click: p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_023_autoQC01.raw
plot_click: p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_023_autoQC01.raw
fn has changed to /srv/www/htdocs//p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_023_autoQC01.raw
Reading raw file: /srv/www/htdocs//p32824/Proteomics/LUMOS_2/analytic_20230914/20230915_C32824_023_autoQC01.raw
length = 4
Plotting chromatograms ...
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_006_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_006_autoQC01.raw
plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_006_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_006_autoQC01.raw
fn has changed to /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw
length = 4
Plotting chromatograms ...
autoQC01 module APEX long nrow: 2500
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, ADVTPADFSEWSK
APEXAUC.lg2
Warning: Removed 44 rows containing missing values (`geom_point()`).
plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_006_autoQC01.raw | plot_click: p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_006_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw
length = 5
Plotting chromatograms ...
autoQC01 module APEX long nrow: 3000
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, ADVTPADFSEWSK, VEATFGVDESNAK
APEXAUC.lg2
Warning: Removed 44 rows containing missing values (`geom_point()`).
Reading raw file: /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw
length = 6
Plotting chromatograms ...
autoQC01 module APEX long nrow: 3500
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, ADVTPADFSEWSK, VEATFGVDESNAK, TPVITGAPYEYR
APEXAUC.lg2
Warning: Removed 44 rows containing missing values (`geom_point()`).
Reading raw file: /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw
length = 7
Plotting chromatograms ...
autoQC01 module APEX long nrow: 4000
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GAGSSEPVTGLDAK, ADVTPADFSEWSK, VEATFGVDESNAK, TPVITGAPYEYR, GTFIIDPAAVIR
APEXAUC.lg2
Warning: Removed 44 rows containing missing values (`geom_point()`).
Reading raw file: /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_001_autoQC01.raw
length = 8
Plotting chromatograms ...


Execution halted