Listening on http://127.0.0.1:41311
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-11-01 08:39:28.663543 | timeMax: 2023-11-22 08:39:28.664182 | timeDiff: 1814400.00063872
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

input timeRange: 7776000 | timeMin: 2023-11-01 07:39:28.664 | timeMax: 2023-11-22 07:39:28.664 | timeDiff: 1814400
nrow dataFiltered(): 0
nrow dataFiltered(): 104
autoQC01 module APEX wide nrow: 252043
autoQC01 module APEX long nrow: 420
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 2 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 336
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
nrow dataFiltered(): 234
nrow dataFiltered(): 72
Warning: Error in device.call: cannot open file 'Rplots.pdf'
  100: device.call
   99: trellis.device
   98: trellis.par.set
   97: renderUI [/export/data01/scratch/FGCZ-MS-QC-DASHBOARD_A331/qc/inst/shiny/fgczmsqc-dashboard/server.R#336]
   96: func
   83: renderFunc
   82: output$plotSummaryLCMSruns
    1: runApp
nrow dataFiltered(): 234
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
nrow dataFiltered(): 72
Warning: Removed 20 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).