Listening on http://127.0.0.1:43861
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2023-11-16 18:40:37.305115 | timeMax: 2023-11-23 18:40:37.305316 | timeDiff: 604800.000201225
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-11-02 18:40:41.412344 | timeMax: 2023-11-23 18:40:41.412983 | timeDiff: 1814400.00063825
nrow dataFiltered(): 0
nrow dataFiltered(): 91
input timeRange: 7776000 | timeMin: 2023-11-02 17:40:41.412 | timeMax: 2023-11-23 17:40:41.413 | timeDiff: 1814400.00100017
nrow dataFiltered(): 91
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-10-02 17:40:42.557 | timeMax: 2023-10-23 17:40:42.558 | timeDiff: 1814400.00100017
nrow dataFiltered(): 156
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-10-02 17:40:42.557 | timeMax: 2023-11-10 17:40:46.337 | timeDiff: 3369603.77999997
nrow dataFiltered(): 247
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-09-01 17:40:52.437 | timeMax: 2023-11-10 17:40:46.337 | timeDiff: 6047993.89999986
nrow dataFiltered(): 364
nrow dataFiltered(): 0
input timeRange: 157680000 | timeMin: 2023-09-01 17:40:52.437 | timeMax: 2023-11-23 18:41:01.728472 | timeDiff: 7171209.29147148
nrow dataFiltered(): 416
nrow dataFiltered(): 0
input timeRange: 157680000 | timeMin: 2023-09-01 17:40:52.437 | timeMax: 2023-11-23 17:41:01.728 | timeDiff: 7171209.29099989
nrow dataFiltered(): 416
nrow dataFiltered(): 0
input timeRange: 157680000 | timeMin: 2020-06-09 17:41:02.747 | timeMax: 2023-11-23 17:41:01.728 | timeDiff: 109036798.981
nrow dataFiltered(): 2834
nrow dataFiltered(): 0
autoQC01 module APEX wide nrow: 252263
autoQC01 module APEX long nrow: 10704
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 104 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
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plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_141_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_071_autoQC01_rep.raw | plot_click: p31999/Proteomics/EXPLORIS_2/analytic_20230622/20230622_C31999_001_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_071_autoQC01_rep3.raw | plot_click: p32024/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C32024_007_autoQC01.raw | plot_click: p31999/Proteomics/EXPLORIS_2/analytic_20230622/20230622_C31999_019_autoQC01.raw | plot_click: p31999/Proteomics/EXPLORIS_2/analytic_20230622/20230622_C31999_028_autoQC01.raw | plot_click: p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_013_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_071_autoQC01_rep3.raw | plot_click: p31999/Proteomics/EXPLORIS_2/analytic_20230622/20230622_C31999_037_autoQC01.raw | plot_click: p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_024_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_071_autoQC01.raw | plot_click: p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_024_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_099_autoQC01.raw | plot_click: p31999/Proteomics/EXPLORIS_2/analytic_20230622/20230622_C31999_044_autoQC01.raw | plot_click: p32068/Proteomics/EXPLORIS_2/analytic_20230629/20230629_C32068_001a_autoQC01.raw | plot_click: p32024/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C32024_011_autoQC01.raw | plot_click: p32113/Proteomics/EXPLORIS_2/analytic_20230628/20230628_C32113_001_autoQC01.raw | plot_click: p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_007_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_043_autoQC01.raw | plot_click: p32068/Proteomics/EXPLORIS_2/analytic_20230629/20230629_C32068_008_autoQC01.raw | plot_click: p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_019_autoQC01.raw | plot_click: p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_019_autoQC01.raw | plot_click: p32068/Proteomics/EXPLORIS_2/analytic_20230629/20230629_C32068_001a_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_043_autoQC01.raw | plot_click: p31999/Proteomics/EXPLORIS_2/analytic_20230622/20230622_C31999_037_autoQC01.raw | plot_click: p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_085_autoQC01.raw | plot_click: p31996/Proteomics/EXPLORIS_2/analytic_20230629/20230629_C31996_001_autoQC01.raw | plot_click: p32149/Proteomics/EXPLORIS_2/analytic_20230629/20230629_C32149_001_autoQC01.raw | plot_click: p31996/Proteomics/EXPLORIS_2/analytic_20230629/20230629_C31996_001_autoQC01.raw | plot_click: p32141/Proteomics/EXPLORIS_2/analytic_20230630/20230630_C32141_001_autoQC01.raw | plot_click: p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_013_autoQC01.raw | plot_click: p32024/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C32024_007_autoQC01.raw
fn has changed to /srv/www/htdocs//p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_141_autoQC01.raw
Reading raw file: /srv/www/htdocs//p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_141_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
Warning: Removed 104 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 10704
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 104 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 10704
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK
APEXAUC.lg2
Warning: Removed 104 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 10704
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR
APEXAUC.lg2
Warning: Removed 104 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 10704
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR, GAGSSEPVTGLDAK
APEXAUC.lg2
Warning: Removed 104 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 10704
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK
APEXAUC.lg2
Warning: Removed 104 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 28544
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK
APEXAUC.lg2
Warning: Removed 306 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
Reading raw file: /srv/www/htdocs//p31749/Proteomics/EXPLORIS_2/analytic_20230613/20230613_C31749_141_autoQC01.raw
length = 8
Plotting chromatograms ...
Read 22032 items
Warning: Error in plot.new: figure margins too large
  173: plot.new
  172: plot.default
  170: FUN
  169: lapply
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-rawrr01-plotProfiles
    1: runApp


Execution halted