Listening on http://127.0.0.1:38023
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-11-03 09:08:49.030687 | timeMax: 2023-11-24 09:08:49.031324 | timeDiff: 1814400.00063777
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

input timeRange: 7776000 | timeMin: 2023-11-03 08:08:49.03069 | timeMax: 2023-11-24 08:08:49.03132 | timeDiff: 1814400.00063014
nrow dataFiltered(): 0
nrow dataFiltered(): 91
input timeRange: 7776000 | timeMin: 2023-11-03 08:08:49.031 | timeMax: 2023-11-24 08:08:49.031 | timeDiff: 1814400
nrow dataFiltered(): 91
nrow dataFiltered(): 0
autoQC01 module APEX wide nrow: 252307
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: 
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fn has changed to /srv/www/htdocs//NA
input timeRange: 7776000 | timeMin: 2023-10-06 08:09:33.079 | timeMax: 2023-11-24 08:08:49.031 | timeDiff: 4233555.9519999
autoQC01 module APEX long nrow: 1128
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 26 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: 
autoQC01 module APEX long nrow: 1128
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 26 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1128
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK
APEXAUC.lg2
Warning: Removed 26 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1128
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR
APEXAUC.lg2
Warning: Removed 26 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 2256
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR
APEXAUC.lg2
Warning: Removed 42 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw
fn has changed to /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
length = 6
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 2256
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK
APEXAUC.lg2
Warning: Removed 42 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw
autoQC01 module APEX long nrow: 2256
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 42 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw
autoQC01 module APEX long nrow: 2256
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 42 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw
autoQC01 module APEX long nrow: 2256
LGGNEQVTR, TPVISGGPYEYR
APEXAUC.lg2
Warning: Removed 42 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw
autoQC01 module APEX long nrow: 2256
LGGNEQVTR
APEXAUC.lg2
Warning: Removed 42 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw | plot_click: p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_012_autoQC01.raw
autoQC01 module APEX long nrow: 376
LGGNEQVTR
APEXAUC.lg2
Warning: Removed 2 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
Reading raw file: /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
length = 1
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 376
LGGNEQVTR, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 2 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 752
LGGNEQVTR, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 8 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
Reading raw file: /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_021_autoQC01.raw
length = 2
Plotting chromatograms ...
Read 22032 items
nrow dataFiltered(): 260
nrow dataFiltered(): 0
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-11-03 09:38:05.166587 | timeMax: 2023-11-24 09:38:05.167663 | timeDiff: 1814400.00107598
nrow dataFiltered(): 0
nrow dataFiltered(): 91
input timeRange: 7776000 | timeMin: 2023-11-03 08:38:05.167 | timeMax: 2023-11-24 08:38:05.168 | timeDiff: 1814400.00099993
nrow dataFiltered(): 91
nrow dataFiltered(): 0
nrow dataFiltered(): 91
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
nrow dataFiltered(): 91
autoQC01 module APEX wide nrow: 252307
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: p33274/Proteomics/EXPLORIS_2/analytic_20231123/20231123_C33274_001_autoQC01.raw | plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
plot_click: p33274/Proteomics/EXPLORIS_2/analytic_20231123/20231123_C33274_001_autoQC01.raw | plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
fn has changed to /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231123/20231123_C33274_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231123/20231123_C33274_001_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
fn has changed to /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEXAUC.lg2
Warning: Removed 38 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
plot_click: p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_026_autoQC01.raw
length = 11
Plotting chromatograms ...
Read 22032 items
Warning: Removed 38 rows containing missing values (`geom_point()`).
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Plotting chromatograms ...
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Plotting chromatograms ...
Read 22032 items
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Plotting chromatograms ...
Read 22032 items
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-11-03 09:55:25.307723 | timeMax: 2023-11-24 09:55:25.309269 | timeDiff: 1814400.00154567
nrow dataFiltered(): 0
nrow dataFiltered(): 91
input timeRange: 7776000 | timeMin: 2023-11-03 08:55:25.308 | timeMax: 2023-11-24 08:55:25.309 | timeDiff: 1814400.00099993
nrow dataFiltered(): 91
nrow dataFiltered(): 0
autoQC01 module APEX wide nrow: 252307
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
length = 3
Plotting chromatograms ...
Read 22032 items
plot_click: 
plot_click: 
fn has changed to /srv/www/htdocs//NA
Read 22032 items
Warning: Error in hist.default: 'x' must be numeric
  171: stop
  170: hist.default
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-rawrr01-plotTools
    1: runApp
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
length = 3
Plotting chromatograms ...
Read 22032 items
nrow dataFiltered(): 91
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nrow dataFiltered(): 91
nrow dataFiltered(): 0
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
nrow dataFiltered(): 91
nrow dataFiltered(): 91
nrow dataFiltered(): 91
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw
length = 3
Plotting chromatograms ...
Read 22032 items
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2AUC
Warning: Removed 15 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
Warning: Removed 38 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEXAUC.lg2FWHM
Warning: Removed 57 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUCAUC.lg2
Warning: Removed 15 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 468
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUCAUC.lg2FWHM
Warning: Removed 20 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEXAUC.lg2
Warning: Removed 38 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEX
Warning: Removed 19 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK

Warning: Error in combine_vars: Faceting variables must have at least one value
  184: <Anonymous>
  183: signalCondition
  182: signal_abort
  181: rlang::abort
  180: cli::cli_abort
  179: combine_vars
  178: compute_layout
  177: self$facet$compute_layout
  176: setup
  175: layout$setup
  174: ggplot_build.ggplot
  172: print.ggplot
  167: func
  165: f
  164: Reduce
  155: do
  154: hybrid_chain
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-auc
    1: runApp
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEX
Warning: Removed 19 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEXAUC
Warning: Removed 38 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEXAUCAUC.lg2
Warning: Removed 57 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
autoQC01 module APEX long nrow: 1716
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK
APEXAUCAUC.lg2FWHM
Warning: Removed 76 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
length = 3
Plotting chromatograms ...
Read 22032 items
Plotting chromatograms ...
Plotting chromatograms ...
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw | plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01_rep.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
Read 22032 items
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_040_autoQC01.raw
length = 3
Plotting chromatograms ...
Plotting chromatograms ...
autoQC01 module APEX long nrow: 300
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUCAUC.lg2FWHM
Warning: Removed 4 rows containing missing values (`geom_point()`).
plot_click: 
nrow dataFiltered(): 754
nrow dataFiltered(): 72


Execution halted