Listening on http://127.0.0.1:35869
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
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input timeRange: 7776000 | timeMin: 2023-11-06 13:08:47.97348 | timeMax: 2023-11-27 13:08:47.974137 | timeDiff: 1814400.00065708
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

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p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw
plotClick: 
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Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw
Plotting chromatograms ...
Read 22032 items
p3000/Proteomics/EXPLORIS_2/analytic_20231106/20231106_005_autoQC4L_K562.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231106/20231106_005_autoQC4L_K562.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231106/20231106_005_autoQC4L_K562.raw
Plotting chromatograms ...
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p3000/Proteomics/EXPLORIS_2/analytic_20231121/20231121_005_autoQC4L_K562.raw
p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_006_autoQC4L.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_006_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_006_autoQC4L.raw
Plotting chromatograms ...
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plotClick: 
fn has changed to /srv/www/htdocs//p33346/Proteomics/LUMOS_2/analytic_20231108/20231108_C33346_005_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p33346/Proteomics/LUMOS_2/analytic_20231108/20231108_C33346_005_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
p33346/Proteomics/LUMOS_2/analytic_20231108/20231108_C33346_005_autoQC4L.raw
autoQC01 module APEX wide nrow: 252890
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LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 6 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
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p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_003_S580219_K562_incl_iRT_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_003_S580219_K562_incl_iRT_autoQC03dia.raw
Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_003_S580219_K562_incl_iRT_autoQC03dia.raw
Plotting chromatograms ...
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p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_004_S580219_K562_incl_iRT_autoQC03dia.raw
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p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_005_S580219_K562_incl_iRT_autoQC03dia.raw
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plotClick: 
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Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw
Plotting chromatograms ...
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p24244/Proteomics/LUMOS_1/tlai_20230622/20230622_007_autoQC4L.raw
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Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231006_XLINK_BSA_DSPP_TBDSPP/20231006_054_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
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Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
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p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_005_autoQC4L_K562.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_005_autoQC4L_K562.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_005_autoQC4L_K562.raw
Plotting chromatograms ...
Read 22032 items
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Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
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Warning: Error in hist.default: 'x' must be numeric
  171: stop
  170: hist.default
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
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p3000/Proteomics/EXPLORIS_2/analytic_20231121/20231121_005_autoQC4L_K562.raw
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NA
autoQC01 module APEX wide nrow: 252890
autoQC01 module APEX long nrow: 528
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw
plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_004_autoQC01.raw
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
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autoQC01 module APEX wide nrow: 252890
autoQC01 module APEX long nrow: 528
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 360
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
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NA
p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_005_autoQC4L.raw
p3000/Proteomics/EXPLORIS_1/lkunz_20231120/20231120_004_autoQC4L_K562.raw
NA
p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_010_autoQC4L.raw
plotClick: 
fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_010_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231113/20231113_010_autoQC4L.raw
Plotting chromatograms ...
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Plotting chromatograms ...
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