Listening on http://127.0.0.1:42735
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
fn has changed to NA
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input timeRange: 7776000 | timeMin: 2023-11-06 20:08:22.129139 | timeMax: 2023-11-27 20:08:22.12981 | timeDiff: 1814400.00067139
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

input timeRange: 7776000 | timeMin: 2023-11-06 19:08:22.129 | timeMax: 2023-11-27 19:08:22.13 | timeDiff: 1814400.00100017
autoQC01 module APEX wide nrow: 252890
autoQC01 module APEX long nrow: 504
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 117
nrow dataFiltered(): 117
NA
p33324/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33324_022_autoQC4L.raw
p33274/Proteomics/EXPLORIS_2/analytic_20231123/20231123_C33274_018_autoQC4L.raw
nrow dataFiltered(): 78
nrow dataFiltered(): 234
Warning: Error in data.frame: arguments imply differing number of rows: 0, 1
  193: stop
  192: data.frame
  191: <reactive:dataSummary> [/export/data01/scratch/FGCZ-MS-QC-DASHBOARD_A331/qc/inst/shiny/fgczmsqc-dashboard/server.R#291]
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: dataSummary
  168: renderPlot [/export/data01/scratch/FGCZ-MS-QC-DASHBOARD_A331/qc/inst/shiny/fgczmsqc-dashboard/server.R#313]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotSummaryLCMSruns
    1: runApp
Warning: Error in data.frame: arguments imply differing number of rows: 0, 1
  177: <Anonymous>
  176: stop
  175: dataSummary
  168: renderPlot [/export/data01/scratch/FGCZ-MS-QC-DASHBOARD_A331/qc/inst/shiny/fgczmsqc-dashboard/server.R#329]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotSummaryCumsum
    1: runApp
Warning: Error in data.frame: arguments imply differing number of rows: 0, 1
  102: <Anonymous>
  101: stop
  100: dataSummary
   97: renderTable [/export/data01/scratch/FGCZ-MS-QC-DASHBOARD_A331/qc/inst/shiny/fgczmsqc-dashboard/server.R#341]
   96: func
   83: renderFunc
   82: output$summaryFrequency
    1: runApp
Warning in max.default(numeric(0), na.rm = FALSE) :
  no non-missing arguments to max; returning -Inf
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input timeRange: 7776000 | timeMin: 2023-11-06 20:11:17.681282 | timeMax: 2023-11-27 20:11:17.682055 | timeDiff: 1814400.00077271
input timeRange: 7776000 | timeMin: 2023-11-06 19:11:17.681 | timeMax: 2023-11-27 19:11:17.682 | timeDiff: 1814400.00099993
nrow dataFiltered(): 54
nrow dataFiltered(): 117
fn has changed to NA
fn has changed to NA
fn has changed to NA
input timeRange: 7776000 | timeMin: 2023-11-06 20:11:34.713535 | timeMax: 2023-11-27 20:11:34.71415 | timeDiff: 1814400.00061512
input timeRange: 7776000 | timeMin: 2023-11-06 19:11:34.714 | timeMax: 2023-11-27 19:11:34.714 | timeDiff: 1814400
nrow dataFiltered(): 54
nrow dataFiltered(): 117
NA
p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw
nrow dataFiltered(): 54
nrow dataFiltered(): 54
p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
NA
p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw
Plotting chromatograms ...
Read 22032 items
p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw
NA
nrow dataFiltered(): 117
NA
p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_006_autoQC4L.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_006_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_006_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
autoQC01 module APEX wide nrow: 252890
autoQC01 module APEX long nrow: 504
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 360
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231126/20231124_C33437_001_autoQC01_rep.raw | plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231126/20231124_C33437_001_autoQC01.raw
plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231126/20231124_C33437_001_autoQC01_rep.raw | plot_click: p33437/Proteomics/EXPLORIS_1/analytic_20231126/20231124_C33437_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33437/Proteomics/EXPLORIS_1/analytic_20231126/20231124_C33437_001_autoQC01_rep.raw
Reading raw file: /srv/www/htdocs//p33437/Proteomics/EXPLORIS_1/analytic_20231126/20231124_C33437_001_autoQC01_rep.raw
Plotting chromatograms ...
Read 22032 items


Execution halted