Listening on http://127.0.0.1:39585
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
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input timeRange: 7776000 | timeMin: 2023-11-07 08:31:17.260361 | timeMax: 2023-11-28 08:31:17.261008 | timeDiff: 1814400.00064659
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

input timeRange: 7776000 | timeMin: 2023-11-07 07:31:17.26 | timeMax: 2023-11-28 07:31:17.261 | timeDiff: 1814400.00099993
autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 54
nrow dataFiltered(): 117
nrow dataFiltered(): 0
nrow dataFiltered(): 0
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input timeRange: 7776000 | timeMin: 2023-11-07 08:32:03.864774 | timeMax: 2023-11-28 08:32:03.86539 | timeDiff: 1814400.00061655
input timeRange: 7776000 | timeMin: 2023-11-07 07:32:03.865 | timeMax: 2023-11-28 07:32:03.865 | timeDiff: 1814400
nrow dataFiltered(): 54
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nrow dataFiltered(): 0
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input timeRange: 7776000 | timeMin: 2023-11-07 08:33:17.010694 | timeMax: 2023-11-28 08:33:17.011329 | timeDiff: 1814400.00063467
input timeRange: 7776000 | timeMin: 2023-11-07 07:33:17.011 | timeMax: 2023-11-28 07:33:17.011 | timeDiff: 1814400
autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
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Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2023-11-21 08:58:05.502843 | timeMax: 2023-11-28 08:58:05.502898 | timeDiff: 604800.000054836
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Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2023-11-21 08:58:12.494715 | timeMax: 2023-11-28 08:58:12.494744 | timeDiff: 604800.000028372
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input timeRange: 7776000 | timeMin: 2023-11-07 08:58:58.964257 | timeMax: 2023-11-28 08:58:58.96488 | timeDiff: 1814400.00062275
input timeRange: 7776000 | timeMin: 2023-11-07 07:58:58.964 | timeMax: 2023-11-28 07:58:58.965 | timeDiff: 1814400.00099993
autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 0
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Error in combine_vars: Faceting variables must have at least one value
  184: <Anonymous>
  183: signalCondition
  182: signal_abort
  181: rlang::abort
  180: cli::cli_abort
  179: combine_vars
  178: compute_layout
  177: self$facet$compute_layout
  176: setup
  175: layout$setup
  174: ggplot_build.ggplot
  172: print.ggplot
  167: func
  165: f
  164: Reduce
  155: do
  154: hybrid_chain
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-auc
    1: runApp
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input timeRange: 7776000 | timeMin: 2023-11-07 09:00:37.082802 | timeMax: 2023-11-28 09:00:37.083416 | timeDiff: 1814400.00061393
input timeRange: 7776000 | timeMin: 2023-11-07 08:00:37.083 | timeMax: 2023-11-28 08:00:37.083 | timeDiff: 1814400
autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
plot_click: p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw
plot_click: p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw
fn has changed to /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
plot_click: p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
Plotting chromatograms ...
Plotting chromatograms ...
nrow dataFiltered(): 54
nrow dataFiltered(): 117
nrow dataFiltered(): 0
nrow dataFiltered(): 0
NA


Execution halted