Listening on http://127.0.0.1:41785
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

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Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
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input timeRange: 7776000 | timeMin: 2023-11-07 10:12:02.887284 | timeMax: 2023-11-28 10:12:02.887924 | timeDiff: 1814400.00063992
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

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autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
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nrow dataFiltered(): 117
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input timeRange: 7776000 | timeMin: 2023-11-07 10:23:17.94595 | timeMax: 2023-11-28 10:23:17.946562 | timeDiff: 1814400.00061178
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autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
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autoQC01 module APEX long nrow: 0
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Error in combine_vars: Faceting variables must have at least one value
  184: <Anonymous>
  183: signalCondition
  182: signal_abort
  181: rlang::abort
  180: cli::cli_abort
  179: combine_vars
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  177: self$facet$compute_layout
  176: setup
  175: layout$setup
  174: ggplot_build.ggplot
  172: print.ggplot
  167: func
  165: f
  164: Reduce
  155: do
  154: hybrid_chain
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01-auc
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input timeRange: 7776000 | timeMin: 2023-11-07 10:48:59.643285 | timeMax: 2023-11-28 10:48:59.64389 | timeDiff: 1814400.00060558
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autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
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APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 0
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Error in combine_vars: Faceting variables must have at least one value
  184: <Anonymous>
  183: signalCondition
  182: signal_abort
  181: rlang::abort
  180: cli::cli_abort
  179: combine_vars
  178: compute_layout
  177: self$facet$compute_layout
  176: setup
  175: layout$setup
  174: ggplot_build.ggplot
  172: print.ggplot
  167: func
  165: f
  164: Reduce
  155: do
  154: hybrid_chain
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
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input timeRange: 7776000 | timeMin: 2023-11-07 11:40:21.564222 | timeMax: 2023-11-28 11:40:21.565841 | timeDiff: 1814400.0016191
input timeRange: 7776000 | timeMin: 2023-11-07 10:40:21.564 | timeMax: 2023-11-28 10:40:21.566 | timeDiff: 1814400.00200009
autoQC01 module APEX wide nrow: 252956
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LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
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Reading raw file: /srv/www/htdocs//p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw
Plotting chromatograms ...
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Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
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autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
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autoQC01 module APEX wide nrow: 252956
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 288
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 4 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
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autoQC01 module APEX long nrow: 288
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 4 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
input timeRange: 2592000 | timeMin: 2023-11-07 11:25:08.294 | timeMax: 2023-11-28 11:25:27.841 | timeDiff: 1814419.54700017
autoQC01 module APEX long nrow: 288
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 4 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
plot_click: p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_004_autoQC01.raw
plot_click: p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_004_autoQC01.raw
fn has changed to /srv/www/htdocs//p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_004_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_004_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
plot_click: p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_004_autoQC01.raw
plot_click: p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_004_autoQC01.raw
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plotClick: 
fn has changed to /srv/www/htdocs//p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw
p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw
plotClick: 
p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw
plotClick: 
p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw
NA
p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw
NA
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p33448/Proteomics/LUMOS_2/analytic_20231121/20231121_C33448_007_autoQC03dia.raw
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