Listening on http://127.0.0.1:43367
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

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Loading required package: readr
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Loading required package: lattice
Loading required package: rawrr
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input timeRange: 7776000 | timeMin: 2023-11-07 19:41:46.248582 | timeMax: 2023-11-28 19:41:46.249218 | timeDiff: 1814400.00063634
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

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p33314/Proteomics/EXPLORIS_2/analytic_20231107/20231107_C33314_012_autoQC01.raw
p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw
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p31401/Proteomics/LUMOS_2/analytic_20230421/20230421_C31401_007_autoQC4L.raw
p31464/Proteomics/LUMOS_2/analytic_20230419/20230419_C31464_007_autoQC4L.raw
plotClick: 
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Reading raw file: /srv/www/htdocs//p31464/Proteomics/LUMOS_2/analytic_20230419/20230419_C31464_007_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
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p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_005_S580219_K562_incl_iRT_autoQC03dia.raw
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Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_005_S580219_K562_incl_iRT_autoQC03dia.raw
Plotting chromatograms ...
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p33448/Proteomics/LUMOS_2/analytic_20231121/20231121_C33448_007_autoQC03dia.raw
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p33448/Proteomics/LUMOS_2/analytic_20231121/20231121_C33448_007_autoQC03dia.raw
Reading raw file: /srv/www/htdocs//p33448/Proteomics/LUMOS_2/analytic_20231121/20231121_C33448_007_autoQC03dia.raw
Plotting chromatograms ...
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Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
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p3000/Proteomics/LUMOS_2/cfortes_20230703/20230703_007_autoQC4L_new_100ng.raw
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p3000/Proteomics/LUMOS_2/tobiasko_20230818_DIA/20230818_006_autoQC4L.raw
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nrow dataFiltered(): 90
plotClick: 
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Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
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p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw
plotClick: 
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Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw
Plotting chromatograms ...
Read 22032 items
Warning in predict.lm(fit, data.frame(xc = xx)) :
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Warning in predict.lm(fit, data.frame(xc = xx)) :
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Warning in predict.lm(fit, data.frame(xc = xx)) :
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nrow dataFiltered(): 3250
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p32703/Proteomics/LUMOS_2/analytic_20230828/20230828_C32703_064a_autoQC4L.raw
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p32166/Proteomics/LUMOS_2/analytic_20230629/20230629_C32166_008_autoQC4L.raw
plotClick: 
fn has changed to /srv/www/htdocs//p32166/Proteomics/LUMOS_2/analytic_20230629/20230629_C32166_008_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p32166/Proteomics/LUMOS_2/analytic_20230629/20230629_C32166_008_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
Warning in predict.lm(fit, data.frame(xc = xx)) :
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Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
nrow dataFiltered(): 22748
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nrow dataFiltered(): 22748
Warning: Removed 128 rows containing missing values (`geom_point()`).


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