Listening on http://127.0.0.1:35293
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-09 12:11:54.001875 | timeMax: 2023-11-30 12:11:54.002571 | timeDiff: 1814400.00069571
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

input timeRange: 7776000 | timeMin: 2023-11-09 11:11:54.002 | timeMax: 2023-11-30 11:11:54.003 | timeDiff: 1814400.00099993
fn has changed to NA
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fn has changed to NA
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-09 12:12:50.060249 | timeMax: 2023-11-30 12:12:50.060897 | timeDiff: 1814400.00064754
input timeRange: 7776000 | timeMin: 2023-11-09 11:12:50.06 | timeMax: 2023-11-30 11:12:50.061 | timeDiff: 1814400.00100017
autoQC01 module APEX wide nrow: 253352
autoQC01 module APEX long nrow: 408
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 480
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 6 rows containing missing values (`geom_point()`).
NA
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
nrow dataFiltered(): 162
nrow dataFiltered(): 702
nrow dataFiltered(): 1760
Warning: Removed 6 rows containing missing values (`geom_point()`).
NA
nrow dataFiltered(): 1760
Warning: Removed 12 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1760
Warning: Removed 18 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1760
Warning: Removed 24 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1760
Warning: Removed 18 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1760
Warning: Removed 12 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1760
Warning: Removed 6 rows containing missing values (`geom_point()`).
p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231128_003_autoQC03dia.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231128_003_autoQC03dia.raw
Plotting chromatograms ...
Read 22032 items
p3000/Proteomics/FUSION_2/chiawei_20231128/20231128_003_autoQC03dia.raw
fn has changed to NA
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-09 12:16:22.808714 | timeMax: 2023-11-30 12:16:22.809328 | timeDiff: 1814400.00061393
input timeRange: 7776000 | timeMin: 2023-11-09 11:16:22.809 | timeMax: 2023-11-30 11:16:22.809 | timeDiff: 1814400
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-09 12:33:44.68907 | timeMax: 2023-11-30 12:33:44.689723 | timeDiff: 1814400.00065303
input timeRange: 7776000 | timeMin: 2023-11-09 11:33:44.689 | timeMax: 2023-11-30 11:33:44.69 | timeDiff: 1814400.00100017
nrow dataFiltered(): 1760
Warning: Removed 6 rows containing missing values (`geom_point()`).
NA
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
nrow dataFiltered(): 162
nrow dataFiltered(): 702
NA
NA
p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_003_autoQC4L_K562_newcolumn.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_003_autoQC4L_K562_newcolumn.raw
Plotting chromatograms ...
Read 22032 items
p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_003_autoQC4L_K562_newcolumn.raw
p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_002_autoQC4L_K562_newcolumn_20231129144657.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_003_autoQC4L_K562_newcolumn.raw
Plotting chromatograms ...
Read 22032 items
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_003_autoQC4L_K562_newcolumn.raw
Plotting chromatograms ...
Read 22032 items
p33353/Proteomics/FUSION_2/tvrosen_20231110/20231110_005_autoQC4L.raw
plotClick: 
Reading raw file: /srv/www/htdocs//p33353/Proteomics/FUSION_2/tvrosen_20231110/20231110_005_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
fn has changed to /srv/www/htdocs//p33353/Proteomics/FUSION_2/tvrosen_20231110/20231110_005_autoQC4L.raw
p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
plotClick: 
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
Plotting chromatograms ...
Read 22032 items
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
p33396/Proteomics/FUSION_2/chiawei_20231110/20231110_011_autoQC4L.raw
plotClick: 
Reading raw file: /srv/www/htdocs//p33396/Proteomics/FUSION_2/chiawei_20231110/20231110_011_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
fn has changed to /srv/www/htdocs//p33396/Proteomics/FUSION_2/chiawei_20231110/20231110_011_autoQC4L.raw
p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
plotClick: 
Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
Plotting chromatograms ...
Read 22032 items
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw
NA


Execution halted