Listening on http://127.0.0.1:41283 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 08:26:54.124083 | timeMax: 2023-12-01 08:26:54.124757 | timeDiff: 1814400.00067425 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save input timeRange: 7776000 | timeMin: 2023-11-10 07:26:54.124 | timeMax: 2023-12-01 07:26:54.125 | timeDiff: 1814400.00099993 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 08:46:18.45736 | timeMax: 2023-12-01 08:46:18.457984 | timeDiff: 1814400.00062394 input timeRange: 7776000 | timeMin: 2023-11-10 07:46:18.457 | timeMax: 2023-12-01 07:46:18.458 | timeDiff: 1814400.00099993 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 1276 Warning: Removed 8 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 253528 autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). NA autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GAGSSEPVTGLDAK, TPVITGAPYEYR APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GAGSSEPVTGLDAK, TPVITGAPYEYR, VEATFGVDESNAK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GAGSSEPVTGLDAK, TPVITGAPYEYR, VEATFGVDESNAK, ADVTPADFSEWSK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GAGSSEPVTGLDAK, TPVITGAPYEYR, VEATFGVDESNAK, ADVTPADFSEWSK, DGLDAASYYAPVR APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GAGSSEPVTGLDAK, TPVITGAPYEYR, VEATFGVDESNAK, ADVTPADFSEWSK, DGLDAASYYAPVR, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1276 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, YILAGVENSK, GTFIIDPGGVIR, GAGSSEPVTGLDAK, TPVITGAPYEYR, VEATFGVDESNAK, ADVTPADFSEWSK, DGLDAASYYAPVR, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). NA autoQC01 module APEX wide nrow: 253539 autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, YILAGVENSK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, YILAGVENSK, ADVTPADFSEWSK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1452 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, YILAGVENSK, ADVTPADFSEWSK APEXAUC.lg2 Warning: Removed 60 rows containing missing values (`geom_point()`). NA autoQC01 module APEX long nrow: 1452 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK APEXAUC.lg2 Warning: Removed 60 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1320 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK APEXAUC.lg2 Warning: Removed 54 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1320 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 54 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1452 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 60 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1452 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 60 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1320 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 58 rows containing missing values (`geom_point()`). p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw autoQC01 module APEX long nrow: 1320 TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 58 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1188 TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 52 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1188 TPVISGGPYEYR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 52 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1056 TPVISGGPYEYR, GTFIIDPAAVIR, GAGSSEPVTGLDAK, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 44 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1056 TPVISGGPYEYR, GTFIIDPAAVIR, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 44 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 924 TPVISGGPYEYR, GTFIIDPAAVIR, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 34 rows containing missing values (`geom_point()`). NA plot_click: p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw fn has changed to /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items plot_click: fn has changed to /srv/www/htdocs//NA plot_click: p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_029_autoQC01.raw fn has changed to /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_029_autoQC01.raw p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_029_autoQC01.raw Reading raw file: /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_029_autoQC01.raw Plotting chromatograms ... Read 22032 items NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 104 NA input timeRange: 15552000 | timeMin: 2023-11-10 07:26:54.124 | timeMax: 2023-12-01 09:07:52.037902 | timeDiff: 1816857.91390157 autoQC01 module APEX long nrow: 924 TPVISGGPYEYR, GTFIIDPAAVIR, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 34 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). input timeRange: 15552000 | timeMin: 2023-11-10 07:26:54.124 | timeMax: 2023-12-01 08:07:52.038 | timeDiff: 1816857.91400003 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). input timeRange: 15552000 | timeMin: 2023-07-14 08:07:59.085 | timeMax: 2023-12-01 08:07:52.038 | timeDiff: 12095992.9530001 nrow dataFiltered(): 11000 Warning: Removed 114 rows containing missing values (`geom_point()`). input timeRange: 15552000 | timeMin: 2023-06-17 08:07:59.085 | timeMax: 2023-12-01 08:07:52.038 | timeDiff: 14428792.9530001 nrow dataFiltered(): 12760 Warning: Removed 117 rows containing missing values (`geom_point()`). p32093/Proteomics/EXPLORIS_2/analytic_20230704/20230704_C32093_001_autoQC01_20230704200556.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 09:08:28.866236 | timeMax: 2023-12-01 09:08:28.866922 | timeDiff: 1814400.00068521 input timeRange: 7776000 | timeMin: 2023-11-10 08:08:28.866 | timeMax: 2023-12-01 08:08:28.867 | timeDiff: 1814400.00100017 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 104 input timeRange: 31536000 | timeMin: 2023-06-17 08:07:59.085 | timeMax: 2023-12-01 09:08:35.782897 | timeDiff: 14428836.697897 nrow dataFiltered(): 12760 Warning: Removed 117 rows containing missing values (`geom_point()`). nrow dataFiltered(): 702 nrow dataFiltered(): 162 input timeRange: 31536000 | timeMin: 2023-06-17 08:07:59.085 | timeMax: 2023-12-01 08:08:35.783 | timeDiff: 14428836.698 nrow dataFiltered(): 12760 Warning: Removed 117 rows containing missing values (`geom_point()`). input timeRange: 31536000 | timeMin: 2022-12-19 08:08:35.791 | timeMax: 2023-12-01 08:08:35.783 | timeDiff: 29980799.9920001 nrow dataFiltered(): 23056 Warning: Removed 155 rows containing missing values (`geom_point()`). nrow dataFiltered(): 312 nrow dataFiltered(): 72 autoQC01 module APEX long nrow: 14672 TPVISGGPYEYR, GTFIIDPAAVIR, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 218 rows containing missing values (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-10-08 08:08:39.021 | timeMax: 2023-12-01 08:08:35.783 | timeDiff: 4665596.76200008 nrow dataFiltered(): 4620 Warning: Removed 39 rows containing missing values (`geom_point()`). nrow dataFiltered(): 4620 Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. Warning: Removed 39 rows containing missing values (`geom_point()`). nrow dataFiltered(): 3300 Warning: Removed 8 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2128 TPVISGGPYEYR, GTFIIDPAAVIR, GTFIIDPGGVIR, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). nrow dataFiltered(): 3300 Warning: Removed 8 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1794 nrow dataFiltered(): 162 NA p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_003_autoQC4L_K562_newcolumn.raw nrow dataFiltered(): 572 nrow dataFiltered(): 144 plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw Plotting chromatograms ... Read 22032 items NA p33346/Proteomics/LUMOS_2/analytic_20231108/20231108_C33346_005_autoQC4L.raw NA p33346/Proteomics/LUMOS_2/analytic_20231108/20231108_C33346_005_autoQC4L.raw p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_013_autoQC4L.raw NA p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw p33346/Proteomics/LUMOS_2/analytic_20231108/20231108_C33346_005_autoQC4L.raw nrow dataFiltered(): 3828 Warning: Removed 14 rows containing missing values (`geom_point()`). p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_001_autoQC01.raw NA input timeRange: 31536000 | timeMin: 2023-11-10 08:10:23.231 | timeMax: 2023-12-01 08:08:35.783 | timeDiff: 1814292.55200005 nrow dataFiltered(): 1232 Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 2592000 | timeMin: 2023-11-10 08:10:23.231 | timeMax: 2023-12-01 09:16:22.556227 | timeDiff: 1814759.32522702 nrow dataFiltered(): 1232 Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 2592000 | timeMin: 2023-11-10 08:10:23.231 | timeMax: 2023-12-01 08:16:22.556 | timeDiff: 1814759.32500005 nrow dataFiltered(): 1232 Warning: Removed 1 rows containing missing values (`geom_point()`). p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw Plotting chromatograms ... Read 22032 items input timeRange: 2592000 | timeMin: 2023-11-25 08:16:23.579 | timeMax: 2023-12-01 08:16:22.556 | timeDiff: 518398.976999998 nrow dataFiltered(): 704 p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_001_autoQC01.raw p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw input timeRange: 2592000 | timeMin: 2023-11-26 08:18:04.432 | timeMax: 2023-12-01 08:16:22.556 | timeDiff: 431898.124000072 nrow dataFiltered(): 704 input timeRange: 2592000 | timeMin: 2023-11-27 08:18:04.432 | timeMax: 2023-12-01 08:16:22.556 | timeDiff: 345498.124000072 nrow dataFiltered(): 528 input timeRange: 2592000 | timeMin: 2023-11-27 08:18:04.432 | timeMax: 2023-11-30 08:18:19.619 | timeDiff: 259215.187000036 nrow dataFiltered(): 484 p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_004_autoQC01.raw input timeRange: 2592000 | timeMin: 2023-11-27 08:18:22.767 | timeMax: 2023-11-30 08:18:19.619 | timeDiff: 259196.851999998 nrow dataFiltered(): 484 input timeRange: 2592000 | timeMin: 2023-11-28 08:18:29.08 | timeMax: 2023-11-30 08:18:19.619 | timeDiff: 172790.539000034 nrow dataFiltered(): 396 p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_001_autoQC01.raw p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_006_autoQC01.raw p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_012_autoQC01.raw Plotting chromatograms ... Read 22032 items p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_012_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw Plotting chromatograms ... Read 22032 items p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_012_autoQC01.raw Plotting chromatograms ... Read 22032 items plotClick: plotClick: p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 09:25:25.715584 | timeMax: 2023-12-01 09:25:25.716249 | timeDiff: 1814400.00066471 input timeRange: 7776000 | timeMin: 2023-11-10 08:25:25.716 | timeMax: 2023-12-01 08:25:25.716 | timeDiff: 1814400 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). Plotting chromatograms ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 104 Plotting chromatograms ... nrow dataFiltered(): 208 nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 09:57:25.736728 | timeMax: 2023-12-01 09:57:25.737365 | timeDiff: 1814400.0006361 input timeRange: 7776000 | timeMin: 2023-11-10 08:57:25.737 | timeMax: 2023-12-01 08:57:25.737 | timeDiff: 1814400 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). NA input timeRange: 7776000 | timeMin: 2023-11-10 08:57:28.58 | timeMax: 2023-12-01 08:57:25.737 | timeDiff: 1814397.15700006 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-24 08:59:11.589 | timeMax: 2023-12-01 08:57:25.737 | timeDiff: 5875094.148 nrow dataFiltered(): 5192 Warning: Removed 49 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-24 08:59:15.125 | timeMax: 2023-12-01 08:57:25.737 | timeDiff: 5875090.61199999 nrow dataFiltered(): 5192 Warning: Removed 49 rows containing missing values (`geom_point()`). nrow dataFiltered(): 5192 Warning: Removed 49 rows containing missing values (`geom_point()`). p33344/Proteomics/EXPLORIS_2/analytic_20231110/20231110_C33344_001_autoQC01.raw NA nrow dataFiltered(): 5192 Warning: Removed 98 rows containing missing values (`geom_point()`). nrow dataFiltered(): 5192 Warning: Removed 49 rows containing missing values (`geom_point()`). nrow dataFiltered(): 5808 Warning: Removed 26 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2023-09-24 08:59:15.125 | timeMax: 2023-12-01 10:00:43.619893 | timeDiff: 5875288.49489331 nrow dataFiltered(): 5808 Warning: Removed 26 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2023-09-24 08:59:15.125 | timeMax: 2023-12-01 09:00:43.62 | timeDiff: 5875288.49499989 nrow dataFiltered(): 5808 Warning: Removed 26 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2021-04-02 09:00:44.782 | timeMax: 2023-12-01 09:00:43.62 | timeDiff: 84067198.8379998 nrow dataFiltered(): 54472 Warning: Removed 460 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_1/lkunz_20230220/20230220_005_autoQC01.raw nrow dataFiltered(): 54472 Warning: Removed 920 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 54472 Warning: Removed 460 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2023-07-24 09:00:49.156 | timeMax: 2023-12-01 09:00:43.62 | timeDiff: 11231994.464 nrow dataFiltered(): 9680 Warning: Removed 32 rows containing missing values (`geom_point()`). p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_RA_PT/20231122_013_autoQC01.raw input timeRange: 94608000 | timeMin: 2022-10-15 09:01:26.977 | timeMax: 2023-12-01 09:00:43.62 | timeDiff: 35596756.6429999 nrow dataFiltered(): 24508 Warning: Removed 135 rows containing missing values (`geom_point()`). NA autoQC01 module APEX wide nrow: 253550 autoQC01 module APEX long nrow: 6684 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 126 rows containing missing values (`geom_point()`). NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 0 nrow dataFiltered(): 1677 p23777/Proteomics/EXPLORIS_1/noheld_20230419/20230419_025_autoQC01.raw NA p33066/Proteomics/EXPLORIS_1/pmanet_20231109/20231109_010_autoQC01.raw p30275/Proteomics/EXPLORIS_1/analytic_20221213/20221213_C30275_001a_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. p24073/Proteomics/EXPLORIS_1/wilkin_20221202_20221202/20221202_011_autoQC01.raw NA Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 126 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1677 nrow dataFiltered(): 24508 Warning: Removed 135 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2022-07-20 09:01:47.982 | timeMax: 2023-12-01 09:00:43.62 | timeDiff: 43113535.6379998 nrow dataFiltered(): 28556 Warning: Removed 179 rows containing missing values (`geom_point()`). p32201/Proteomics/EXPLORIS_1/analytic_20230707/20230707_C32201_001_autoQC01.raw p31437/Proteomics/EXPLORIS_1/roschi_20230414_DIA_human_yeast/20230414_001_autoQC01.raw NA plotClick: p23777/Proteomics/EXPLORIS_1/noheld_20230614/20230614_001_autoQC01.raw input timeRange: 94608000 | timeMin: 2022-07-20 09:01:47.982 | timeMax: 2022-12-25 09:04:52.087 | timeDiff: 13651384.1049998 nrow dataFiltered(): 7304 Warning: Removed 71 rows containing missing values (`geom_point()`). NA p29410/Proteomics/EXPLORIS_1/analytic_20220909/20220909_011_autoQC01.raw input timeRange: 94608000 | timeMin: 2021-04-10 09:05:06.992 | timeMax: 2022-12-25 09:04:52.087 | timeDiff: 53913585.0949998 nrow dataFiltered(): 33176 Warning: Removed 352 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2021-04-10 09:05:06.992 | timeMax: 2023-09-03 09:05:58.855 | timeDiff: 75686451.8629999 nrow dataFiltered(): 47036 Warning: Removed 433 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 12828 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 216 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2021-04-10 09:05:06.992 | timeMax: 2023-11-13 09:06:00.833 | timeDiff: 81820853.8409998 nrow dataFiltered(): 53108 Warning: Removed 452 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 94608000 | timeMin: 2023-05-08 09:07:17.015 | timeMax: 2023-11-13 09:06:00.833 | timeDiff: 16329523.8179998 nrow dataFiltered(): 12980 Warning: Removed 49 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). nrow dataFiltered(): 11924 Warning: Removed 31 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 2028 nrow dataFiltered(): 0 NA input timeRange: 94608000 | timeMin: 2023-05-08 09:07:17.015 | timeMax: 2023-12-01 09:08:01.17892 | timeDiff: 17884844.1639199 nrow dataFiltered(): 2210 nrow dataFiltered(): 144 input timeRange: 94608000 | timeMin: 2023-05-08 09:07:17.015 | timeMax: 2023-12-01 09:08:01.179 | timeDiff: 17884844.1639998 nrow dataFiltered(): 2210 nrow dataFiltered(): 144 NA p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw NA nrow dataFiltered(): 2210 nrow dataFiltered(): 2210 nrow dataFiltered(): 2210 nrow dataFiltered(): 2210 nrow dataFiltered(): 2210 nrow dataFiltered(): 2210 input timeRange: 94608000 | timeMin: 2023-09-03 09:08:14.33 | timeMax: 2023-12-01 09:08:01.179 | timeDiff: 7689586.84899998 nrow dataFiltered(): 832 nrow dataFiltered(): 144 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 10:13:52.210871 | timeMax: 2023-12-01 10:13:52.211502 | timeDiff: 1814400.00063086 input timeRange: 7776000 | timeMin: 2023-11-10 09:13:52.211 | timeMax: 2023-12-01 09:13:52.211 | timeDiff: 1814400 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-10 09:13:55.106 | timeMax: 2023-12-01 09:13:52.211 | timeDiff: 1814397.10500002 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 253561 autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). NA p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231114_m1_m2/20231114_C33281_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_039_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-11-24 10:16:59.772425 | timeMax: 2023-12-01 10:16:59.77248 | timeDiff: 604800.000055313 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 10:17:02.794788 | timeMax: 2023-12-01 10:17:02.795407 | timeDiff: 1814400.00061917 input timeRange: 7776000 | timeMin: 2023-11-10 09:17:02.795 | timeMax: 2023-12-01 09:17:02.795 | timeDiff: 1814400 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1452 Warning: Removed 60 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1452 Warning: Removed 90 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1452 Warning: Removed 120 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1452 Warning: Removed 90 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1452 Warning: Removed 60 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). p33324/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33324_001a_autoQC01.raw NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-04 09:18:37.015 | timeMax: 2023-12-01 09:17:02.795 | timeDiff: 2332705.77999997 nrow dataFiltered(): 143 nrow dataFiltered(): 54 autoQC01 module APEX wide nrow: 253561 autoQC01 module APEX long nrow: 600 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). nrow dataFiltered(): 2200 Warning: Removed 30 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1716 Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-26 09:20:04.766 | timeMax: 2023-12-01 09:17:02.795 | timeDiff: 431818.029000044 nrow dataFiltered(): 704 p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 704 p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Reading raw file: /srv/www/htdocs//p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_017_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_012_autoQC01.raw Plotting chromatograms ... NA nrow dataFiltered(): 1848 Warning: Removed 24 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1848 Warning: Removed 12 rows containing missing values (`geom_point()`). Plotting chromatograms ... p25334/Proteomics/LUMOS_1/dlesli_20231130_DLP227/20231130_015_autoQC01.raw NA nrow dataFiltered(): 704 nrow dataFiltered(): 924 nrow dataFiltered(): 352 Warning: Removed 1 rows containing missing values (`geom_point()`). nrow dataFiltered(): 308 Warning: Removed 6 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). nrow dataFiltered(): 132 Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-03 09:20:09.512 | timeMax: 2023-12-01 09:17:02.795 | timeDiff: 2419013.28299999 nrow dataFiltered(): 2200 Warning: Removed 30 rows containing missing values (`geom_point()`). nrow dataFiltered(): 143 nrow dataFiltered(): 54 NA nrow dataFiltered(): 520 nrow dataFiltered(): 72 nrow dataFiltered(): 2860 Warning: Removed 13 rows containing missing values (`geom_point()`). p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123124131.raw NA Execution halted