Listening on http://127.0.0.1:46007 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 11:01:20.593567 | timeMax: 2023-12-01 11:01:20.594248 | timeDiff: 1814400.00068164 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save input timeRange: 7776000 | timeMin: 2023-11-10 10:01:20.594 | timeMax: 2023-12-01 10:01:20.594 | timeDiff: 1814400 nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 253561 autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). NA Warning: Removed 20 rows containing missing values (`geom_point()`). p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw plot_click: p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw fn has changed to /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA autoQC01 module APEX long nrow: 396 LGGNEQVTR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 264 LGGNEQVTR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 264 LGGNEQVTR, GTFIIDPGGVIR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 396 LGGNEQVTR, GTFIIDPGGVIR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 18 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 396 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 18 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 528 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 24 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 1452 Warning: Removed 30 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 448 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 448 LGGNEQVTR, YILAGVENSK, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 336 LGGNEQVTR, YILAGVENSK, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 448 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 448 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 448 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 448 GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPAAVIR, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, VEATFGVDESNAK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, VEATFGVDESNAK, TPVITGAPYEYR, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 336 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 autoQC01 module APEX long nrow: 1232 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_006_autoQC01.raw nrow dataFiltered(): 1232 Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-10-03 10:01:24.443 | timeMax: 2023-12-01 10:01:20.594 | timeDiff: 5097596.15100002 nrow dataFiltered(): 4356 Warning: Removed 14 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-07 10:34:42.146 | timeMax: 2023-12-01 10:01:20.594 | timeDiff: 7341998.44800019 nrow dataFiltered(): 6072 Warning: Removed 23 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 6072 LGGNEQVTR, GTFIIDPAAVIR, TPVISGGPYEYR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 46 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 6072 LGGNEQVTR, GTFIIDPAAVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 46 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 5520 LGGNEQVTR, GTFIIDPAAVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, ADVTPADFSEWSK, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 46 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 5520 LGGNEQVTR, GTFIIDPAAVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 46 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 4968 LGGNEQVTR, GTFIIDPAAVIR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 40 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 4968 LGGNEQVTR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 40 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 4416 LGGNEQVTR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 40 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 4416 LGGNEQVTR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 40 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 3864 LGGNEQVTR, VEATFGVDESNAK, TPVITGAPYEYR, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 36 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 3864 LGGNEQVTR, VEATFGVDESNAK, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 36 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 3312 LGGNEQVTR, VEATFGVDESNAK, DGLDAASYYAPVR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 36 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA autoQC01 module APEX long nrow: 3312 LGGNEQVTR, VEATFGVDESNAK, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 36 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2760 LGGNEQVTR, VEATFGVDESNAK, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 3300 LGGNEQVTR, VEATFGVDESNAK, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 6 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 3120 LGGNEQVTR, VEATFGVDESNAK, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 44 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2860 LGGNEQVTR, VEATFGVDESNAK, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2860 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2288 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 2208 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2496 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 40 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2640 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 6 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 0 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 autoQC01 module APEX long nrow: 2192 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 148 rows containing missing values (`geom_point()`). Warning: Removed 10 rows containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 1776 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1776 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2220 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 3300 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 3120 LGGNEQVTR, DGLDAASYYAPVR, GTFIIDPGGVIR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 54 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 3120 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 54 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2496 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 40 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items autoQC01 module APEX long nrow: 2640 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2208 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2288 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 1776 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 2192 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 142 rows containing missing values (`geom_point()`). Warning: Removed 10 rows containing missing values (`geom_line()`). Plotting chromatograms ... autoQC01 module APEX long nrow: 2640 LGGNEQVTR, DGLDAASYYAPVR, YILAGVENSK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). Read 22032 items Plotting chromatograms ... Warning: Removed 4 rows containing missing values (`geom_point()`). nrow dataFiltered(): 7260 Warning: Removed 27 rows containing missing values (`geom_point()`). nrow dataFiltered(): 6864 Warning: Removed 64 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 429 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 13:08:39.472406 | timeMax: 2023-12-01 13:08:39.473008 | timeDiff: 1814400.00060153 input timeRange: 7776000 | timeMin: 2023-11-10 12:08:39.472 | timeMax: 2023-12-01 12:08:39.473 | timeDiff: 1814400.00100017 nrow dataFiltered(): 1408 Warning: Removed 30 rows containing missing values (`geom_point()`). Execution halted