Listening on http://127.0.0.1:37773 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 09:34:53.26521 | timeMax: 2023-12-04 09:34:53.265864 | timeDiff: 1814400.00065398 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save input timeRange: 7776000 | timeMin: 2023-11-13 08:34:53.265 | timeMax: 2023-12-04 08:34:53.266 | timeDiff: 1814400.00099993 nrow dataFiltered(): 1188 Warning: Removed 30 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 253748 autoQC01 module APEX long nrow: 324 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 182 nrow dataFiltered(): 144 nrow dataFiltered(): 260 nrow dataFiltered(): 72 nrow dataFiltered(): 260 nrow dataFiltered(): 72 input timeRange: 7776000 | timeMin: 2023-11-08 08:35:08.208 | timeMax: 2023-12-04 08:34:53.266 | timeDiff: 2246385.05800009 nrow dataFiltered(): 364 nrow dataFiltered(): 72 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 09:37:51.729329 | timeMax: 2023-12-04 09:37:51.729957 | timeDiff: 1814400.00062799 input timeRange: 7776000 | timeMin: 2023-11-13 08:37:51.729 | timeMax: 2023-12-04 08:37:51.73 | timeDiff: 1814400.00099993 nrow dataFiltered(): 1188 Warning: Removed 30 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1188 Warning: Removed 30 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 260 nrow dataFiltered(): 72 nrow dataFiltered(): 2508 Warning: Removed 16 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1188 Warning: Removed 30 rows containing missing values (`geom_point()`). p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33171/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33171_005_autoQC01.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 1408 Warning: Removed 9 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p33437/Proteomics/EXPLORIS_1/analytic_20231126/20231130_C33437_015_autoQC01.raw autoQC01 module APEX wide nrow: 253748 autoQC01 module APEX long nrow: 384 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 09:58:30.142365 | timeMax: 2023-12-04 09:58:30.143709 | timeDiff: 1814400.0013442 input timeRange: 7776000 | timeMin: 2023-11-13 08:58:30.142 | timeMax: 2023-12-04 08:58:30.144 | timeDiff: 1814400.00200009 nrow dataFiltered(): 1188 Warning: Removed 30 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 10:13:07.137467 | timeMax: 2023-12-04 10:13:07.138107 | timeDiff: 1814400.00063968 input timeRange: 7776000 | timeMin: 2023-11-13 09:13:07.137 | timeMax: 2023-12-04 09:13:07.138 | timeDiff: 1814400.00099993 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 0 nrow dataFiltered(): 0 NA input timeRange: 15552000 | timeMin: 2023-11-13 09:13:07.137 | timeMax: 2023-12-04 10:13:23.820641 | timeDiff: 1814416.68364096 nrow dataFiltered(): 0 nrow dataFiltered(): 0 input timeRange: 15552000 | timeMin: 2023-11-13 09:13:07.137 | timeMax: 2023-12-04 09:13:23.821 | timeDiff: 1814416.68400002 nrow dataFiltered(): 0 nrow dataFiltered(): 0 nrow dataFiltered(): 598 nrow dataFiltered(): 162 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 10:19:32.245546 | timeMax: 2023-12-04 10:19:32.246185 | timeDiff: 1814400.00063872 input timeRange: 7776000 | timeMin: 2023-11-13 09:19:32.246 | timeMax: 2023-12-04 09:19:32.246 | timeDiff: 1814400 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 260 nrow dataFiltered(): 72 nrow dataFiltered(): 1188 Warning: Removed 30 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 416 nrow dataFiltered(): 54 input timeRange: 7776000 | timeMin: 2023-09-14 09:38:36.722 | timeMax: 2023-12-04 08:58:30.144 | timeDiff: 6995993.42200017 input timeRange: 15552000 | timeMin: 2023-09-14 09:38:36.722 | timeMax: 2023-12-04 10:38:47.457985 | timeDiff: 6998410.73598528 nrow dataFiltered(): 416 nrow dataFiltered(): 54 input timeRange: 15552000 | timeMin: 2023-09-14 09:38:36.722 | timeMax: 2023-12-04 09:38:47.458 | timeDiff: 6998410.73600006 nrow dataFiltered(): 416 nrow dataFiltered(): 54 input timeRange: 15552000 | timeMin: 2023-07-01 09:38:48.87 | timeMax: 2023-12-04 09:38:47.458 | timeDiff: 13478398.5880001 nrow dataFiltered(): 767 nrow dataFiltered(): 54 nrow dataFiltered(): 585 nrow dataFiltered(): 0 NA nrow dataFiltered(): 767 nrow dataFiltered(): 54 nrow dataFiltered(): 1586 nrow dataFiltered(): 144 nrow dataFiltered(): 2756 nrow dataFiltered(): 72 nrow dataFiltered(): 0 nrow dataFiltered(): 72 nrow dataFiltered(): 2756 nrow dataFiltered(): 72 nrow dataFiltered(): 2756 p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_018_autoQC4L.raw NA p25334/Proteomics/LUMOS_1/dlesli_20230921_DLP224/20230921_053_autoQC4L.raw p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_018_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_018_autoQC4L.raw Reading raw file: /srv/www/htdocs//p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_018_autoQC4L.raw Plotting chromatograms ... Read 22032 items NA input timeRange: 15552000 | timeMin: 2023-10-26 09:38:51.909 | timeMax: 2023-12-04 09:38:47.458 | timeDiff: 3369595.54900002 nrow dataFiltered(): 624 nrow dataFiltered(): 72 nrow dataFiltered(): 1378 nrow dataFiltered(): 162 nrow dataFiltered(): 1378 nrow dataFiltered(): 162 Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. nrow dataFiltered(): 1378 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 10:48:52.066921 | timeMax: 2023-12-04 10:48:52.067665 | timeDiff: 1814400.00074339 input timeRange: 7776000 | timeMin: 2023-11-13 09:48:52.067 | timeMax: 2023-12-04 09:48:52.068 | timeDiff: 1814400.00100017 nrow dataFiltered(): 1364 Warning: Removed 30 rows containing missing values (`geom_point()`). input timeRange: 15552000 | timeMin: 2023-11-15 09:48:36.53 | timeMax: 2023-12-04 09:38:47.458 | timeDiff: 1641010.92799997 nrow dataFiltered(): 546 nrow dataFiltered(): 162 nrow dataFiltered(): 2508 Warning: Removed 16 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 72 nrow dataFiltered(): 260 NA NA nrow dataFiltered(): 182 nrow dataFiltered(): 144 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 10:57:35.126853 | timeMax: 2023-12-04 10:57:35.127523 | timeDiff: 1814400.00066948 input timeRange: 7776000 | timeMin: 2023-11-13 09:57:35.127 | timeMax: 2023-12-04 09:57:35.128 | timeDiff: 1814400.00099993 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 260 nrow dataFiltered(): 72 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 11:00:33.656489 | timeMax: 2023-12-04 11:00:33.657984 | timeDiff: 1814400.00149488 input timeRange: 7776000 | timeMin: 2023-11-13 10:00:33.656 | timeMax: 2023-12-04 10:00:33.658 | timeDiff: 1814400.00200009 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 72 nrow dataFiltered(): 260 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 11:24:39.530837 | timeMax: 2023-12-04 11:24:39.532214 | timeDiff: 1814400.00137758 input timeRange: 7776000 | timeMin: 2023-11-13 10:24:39.531 | timeMax: 2023-12-04 10:24:39.532 | timeDiff: 1814400.00100017 nrow dataFiltered(): 1364 Warning: Removed 30 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 11:29:28.875549 | timeMax: 2023-12-04 11:29:28.876191 | timeDiff: 1814400.00064278 input timeRange: 7776000 | timeMin: 2023-11-13 10:29:28.876 | timeMax: 2023-12-04 10:29:28.876 | timeDiff: 1814400 autoQC01 module APEX wide nrow: 253803 autoQC01 module APEX long nrow: 372 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 182 nrow dataFiltered(): 144 nrow dataFiltered(): 260 nrow dataFiltered(): 72 nrow dataFiltered(): 2552 Warning: Removed 16 rows containing missing values (`geom_point()`). nrow dataFiltered(): 2552 Warning: Removed 16 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 11:40:45.130156 | timeMax: 2023-12-04 11:40:45.130789 | timeDiff: 1814400.00063324 input timeRange: 7776000 | timeMin: 2023-11-13 10:40:45.13 | timeMax: 2023-12-04 10:40:45.131 | timeDiff: 1814400.00099993 nrow dataFiltered(): 1364 Warning: Removed 30 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 78 nrow dataFiltered(): 260 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-10-07 10:40:49.247 | timeMax: 2023-12-04 10:40:45.131 | timeDiff: 5011195.88400006 nrow dataFiltered(): 1248 nrow dataFiltered(): 126 nrow dataFiltered(): 2552 Warning: Removed 16 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 11:56:20.984475 | timeMax: 2023-12-04 11:56:20.985057 | timeDiff: 1814400.00058174 input timeRange: 7776000 | timeMin: 2023-11-13 10:56:20.984 | timeMax: 2023-12-04 10:56:20.985 | timeDiff: 1814400.00099993 nrow dataFiltered(): 2552 Warning: Removed 16 rows containing missing values (`geom_point()`). NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 126 nrow dataFiltered(): 260 input timeRange: 7776000 | timeMin: 2023-11-21 10:56:26.177 | timeMax: 2023-12-04 10:56:20.985 | timeDiff: 1123194.80799985 nrow dataFiltered(): 156 nrow dataFiltered(): 54 NA NA nrow dataFiltered(): 104 nrow dataFiltered(): 72 nrow dataFiltered(): 416 nrow dataFiltered(): 180 nrow dataFiltered(): 416 nrow dataFiltered(): 416 nrow dataFiltered(): 156 nrow dataFiltered(): 54 nrow dataFiltered(): 156 nrow dataFiltered(): 104 nrow dataFiltered(): 72 nrow dataFiltered(): 0 nrow dataFiltered(): 72 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 12:52:23.576164 | timeMax: 2023-12-04 12:52:23.576767 | timeDiff: 1814400.00060296 input timeRange: 7776000 | timeMin: 2023-11-13 11:52:23.576 | timeMax: 2023-12-04 11:52:23.577 | timeDiff: 1814400.00099993 nrow dataFiltered(): 1320 Warning: Removed 30 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 13:40:11.385213 | timeMax: 2023-12-04 13:40:11.385936 | timeDiff: 1814400.00072336 input timeRange: 7776000 | timeMin: 2023-11-13 12:40:11.385 | timeMax: 2023-12-04 12:40:11.386 | timeDiff: 1814400.00099993 nrow dataFiltered(): 1276 Warning: Removed 30 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nrow dataFiltered(): 54 nrow dataFiltered(): 104 nrow dataFiltered(): 598 nrow dataFiltered(): 180 nrow dataFiltered(): 1320 Warning: Removed 30 rows containing missing values (`geom_point()`). Execution halted