Listening on http://127.0.0.1:38025 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 08:56:56.11384 | timeMax: 2023-12-05 08:56:56.114424 | timeDiff: 1814400.00058317 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 07:56:56.114 | timeMax: 2023-12-05 07:56:56.114 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 7 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 156 NA nFacets: 1 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 54 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 09:06:16.742242 | timeMax: 2023-12-05 09:06:16.742821 | timeDiff: 1814400.00057912 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 08:06:16.742 | timeMax: 2023-12-05 08:06:16.743 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 7 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 976 input timeRange: 7776000 | timeMin: 2023-10-10 08:06:17.668 | timeMax: 2023-12-05 08:06:16.743 | timeDiff: 4838399.07500005 nFacets: 4 nrow dataFiltered(): 2032 Warning: Removed 4 rows containing missing values (`geom_point()`). p33171/Proteomics/LUMOS_1/analytic_20231110/20231110_C33171_001_autoQC01_20231111073324.raw p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_006_autoQC01.raw Reading raw file: /srv/www/htdocs//p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_006_autoQC01.raw Plotting chromatograms ... Read 22032 items nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 1196 p3000/Proteomics/LUMOS_1/pgehrig_20231005_autoQC/20231023_15_autoQC4L.raw NA nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 72 NA p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip plotClick: plotClick: NA nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1648 Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1648 Warning: Removed 20 rows containing missing values (`geom_point()`). NA p32970/Proteomics/EXPLORIS_2/analytic_20231005/20231005_C32970_007_autoQC01.raw NA nrow dataFiltered(): 1648 Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. Warning: Removed 20 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1648 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 09:55:20.399557 | timeMax: 2023-12-05 09:55:20.400161 | timeDiff: 1814400.00060415 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 08:55:20.4 | timeMax: 2023-12-05 08:55:20.4 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 0 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 10:20:10.244965 | timeMax: 2023-12-05 10:20:10.245548 | timeDiff: 1814400.0005827 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 09:20:10.245 | timeMax: 2023-12-05 09:20:10.246 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 5184000 | timeMin: 2023-11-14 09:20:10.245 | timeMax: 2023-12-05 10:20:20.280787 | timeDiff: 1814410.03578758 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 528 input timeRange: 5184000 | timeMin: 2023-11-14 09:20:10.245 | timeMax: 2023-12-05 09:20:20.281 | timeDiff: 1814410.03600001 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw NA nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw Plotting chromatograms ... Read 22032 items nFacets: 1 nFacets: 1 NA nrow dataFiltered(): 54 nrow dataFiltered(): 91 NA p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw NA NA p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_024_autoQC03dia_2ul.raw p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 10:44:27.668128 | timeMax: 2023-12-05 10:44:27.668868 | timeDiff: 1814400.00073957 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 09:44:27.668 | timeMax: 2023-12-05 09:44:27.669 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 144 NA nFacets: 4 nrow dataFiltered(): 992 p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125034743.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231124024236.raw NA p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123210617.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123124131.raw NA p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231124024236.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125003727.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231126025809.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123210617.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123124131.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01.raw NA p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231124024236.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231125124309.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231125073437.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231126025809.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231124053046.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231125124309.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123235427.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231126174009.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231125073437.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231126025809.raw NA input timeRange: 7776000 | timeMin: 2023-11-22 09:44:28.743 | timeMax: 2023-12-05 09:44:27.669 | timeDiff: 1123198.92599988 nFacets: 4 nrow dataFiltered(): 864 input timeRange: 7776000 | timeMin: 2023-11-22 09:44:28.743 | timeMax: 2023-11-25 09:46:18.111 | timeDiff: 259309.368000031 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-22 09:44:28.743 | timeMax: 2023-11-29 09:46:24.088 | timeDiff: 604915.345000029 nFacets: 4 nrow dataFiltered(): 480 p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123210617.raw NA p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_017_autoQC01.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125034743.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125003727.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125012411.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125003727.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231124053046.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231124024236.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231125191621.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231125191621.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125034743.raw NA nFacets: 4 nrow dataFiltered(): 144 nFacets: 4 nrow dataFiltered(): 160 Warning: Removed 5 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-09 09:46:27.84 | timeMax: 2023-11-29 09:46:24.088 | timeDiff: 6998396.24800014 nFacets: 4 nrow dataFiltered(): 2112 Warning: Removed 67 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nrow dataFiltered(): 2112 Warning: Removed 134 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nrow dataFiltered(): 2112 Warning: Removed 67 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). p33281/Proteomics/QEXACTIVE_1/analytic_20231106/20231106_C33281_001_autoQC01.raw nFacets: 1 nrow dataFiltered(): 494 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 494 nrow dataFiltered(): 494 input timeRange: 283824000 | timeMin: 2023-09-09 09:46:27.84 | timeMax: 2023-12-05 10:47:57.774319 | timeDiff: 7516889.9343195 nFacets: 1 nrow dataFiltered(): 507 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 507 input timeRange: 283824000 | timeMin: 2023-09-09 09:46:27.84 | timeMax: 2023-12-05 09:47:57.774 | timeDiff: 7516889.93400002 nFacets: 1 nrow dataFiltered(): 507 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 507 nrow dataFiltered(): 507 input timeRange: 283824000 | timeMin: 2016-07-31 09:47:58.739 | timeMax: 2023-12-05 09:47:57.774 | timeDiff: 231811199.035 nFacets: 1 nrow dataFiltered(): 5941 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 5941 nrow dataFiltered(): 5941 nrow dataFiltered(): 5941 nrow dataFiltered(): 52 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? Plotting chromatograms ... Read 22032 items p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw nrow dataFiltered(): 52 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 11:59:32.410509 | timeMax: 2023-12-05 11:59:32.411158 | timeDiff: 1814400.00064969 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-14 10:59:32.411 | timeMax: 2023-12-05 10:59:32.411 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 544 NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 52 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 12:21:48.482751 | timeMax: 2023-12-05 12:21:48.483328 | timeDiff: 1814400.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 11:21:48.483 | timeMax: 2023-12-05 11:21:48.483 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 117 nFacets: 1 nrow dataFiltered(): 0 NA input timeRange: 7776000 | timeMin: 2023-09-24 11:22:16 | timeMax: 2023-12-05 11:21:48.483 | timeDiff: 6220772.48300004 nFacets: 1 nrow dataFiltered(): 429 nFacets: 1 nrow dataFiltered(): 0 p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw input timeRange: 7776000 | timeMin: 2023-09-30 11:22:51.278 | timeMax: 2023-12-05 11:21:48.483 | timeDiff: 5702337.20499992 nFacets: 1 nrow dataFiltered(): 390 nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-09-26 11:22:51.278 | timeMax: 2023-12-05 11:21:48.483 | timeDiff: 6047937.20499992 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 0 NA p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 12:37:10.146769 | timeMax: 2023-12-05 12:37:10.147449 | timeDiff: 1814400.00068045 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 11:37:10.147 | timeMax: 2023-12-05 11:37:10.147 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 13:38:43.478853 | timeMax: 2023-12-05 13:38:43.479423 | timeDiff: 1814400.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 12:38:43.479 | timeMax: 2023-12-05 12:38:43.479 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 544 p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_001_autoQC01_rep.raw p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_001_autoQC01_rep.raw plotClick: fn has changed to /srv/www/htdocs//p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_001_autoQC01_rep.raw Reading raw file: /srv/www/htdocs//p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_001_autoQC01_rep.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_RA_PT/20231122_001_autoQC01.raw p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_RA_PT/20231122_001_autoQC01.raw p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_RA_PT/20231122_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 52 NA nrow dataFiltered(): 52 nrow dataFiltered(): 544 nrow dataFiltered(): 544 NA nFacets: 1 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 156 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 260 nrow dataFiltered(): 260 autoQC01 module APEX wide nrow: 253968 autoQC01 module APEX long nrow: 744 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 30 rows containing missing values (`geom_point()`). NA nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 0 p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip nFacets: 1 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 144 Reading raw file: /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason. Please check the debug files: /tmp/RtmpWRSYzQ/file2539aa612b9897.stderr /tmp/RtmpWRSYzQ/file2539aa276b12ae.stdout and the System Requirements 194: stop 193: .rawrrSystem2Source 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason. Please check the debug files: /tmp/RtmpWRSYzQ/file2539aa612b9897.stderr /tmp/RtmpWRSYzQ/file2539aa276b12ae.stdout and the System Requirements 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason. Please check the debug files: /tmp/RtmpWRSYzQ/file2539aa612b9897.stderr /tmp/RtmpWRSYzQ/file2539aa276b12ae.stdout and the System Requirements 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotProfiles 1: runApp nFacets: 1 nrow dataFiltered(): 546 nFacets: 1 nrow dataFiltered(): 180 nrow dataFiltered(): 546 nrow dataFiltered(): 180 nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 13:59:06.095297 | timeMax: 2023-12-05 13:59:06.095884 | timeDiff: 1814400.00058627 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 12:59:06.095 | timeMax: 2023-12-05 12:59:06.096 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-11-28 14:10:16.253896 | timeMax: 2023-12-05 14:10:16.253945 | timeDiff: 604800.000049114 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 14:10:24.416684 | timeMax: 2023-12-05 14:10:24.417377 | timeDiff: 1814400.00069237 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 13:10:24.417 | timeMax: 2023-12-05 13:10:24.417 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 15:21:16.559952 | timeMax: 2023-12-05 15:21:16.560641 | timeDiff: 1814400.00068879 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-14 14:21:16.56 | timeMax: 2023-12-05 14:21:16.561 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 992 input timeRange: 15552000 | timeMin: 2023-11-14 14:21:16.56 | timeMax: 2023-12-05 15:26:39.781197 | timeDiff: 1814723.22119713 nFacets: 4 nrow dataFiltered(): 992 input timeRange: 15552000 | timeMin: 2023-11-14 14:21:16.56 | timeMax: 2023-12-05 14:26:39.781 | timeDiff: 1814723.22099996 nFacets: 4 nrow dataFiltered(): 992 input timeRange: 7776000 | timeMin: 2023-11-14 14:21:16.56 | timeMax: 2023-12-05 15:26:46.139357 | timeDiff: 1814729.57935715 nFacets: 4 nrow dataFiltered(): 992 input timeRange: 7776000 | timeMin: 2023-11-14 14:21:16.56 | timeMax: 2023-12-05 14:26:46.139 | timeDiff: 1814729.579 nFacets: 4 nrow dataFiltered(): 992 p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 260 autoQC01 module APEX wide nrow: 253968 autoQC01 module APEX long nrow: 744 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 30 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 15:39:20.462791 | timeMax: 2023-12-05 15:39:20.463448 | timeDiff: 1814400.00065637 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 14:39:20.463 | timeMax: 2023-12-05 14:39:20.463 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 992 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 15:39:54.398973 | timeMax: 2023-12-05 15:39:54.399668 | timeDiff: 1814400.00069475 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-14 14:39:54.399 | timeMax: 2023-12-05 14:39:54.4 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_001_autoQC01.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast/20231203_006_autoQC01.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_006_autoQC01.raw p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_012_autoQC01.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_012_autoQC01.raw NA p25334/Proteomics/LUMOS_1/dlesli_20231130_DLP227/20231130_015_autoQC01.raw NA nrow dataFiltered(): 992 nrow dataFiltered(): 992 nrow dataFiltered(): 992 nrow dataFiltered(): 992 nrow dataFiltered(): 992 nrow dataFiltered(): 992 nrow dataFiltered(): 992 nrow dataFiltered(): 992 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 260 autoQC01 module APEX wide nrow: 253968 autoQC01 module APEX long nrow: 744 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 30 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 744 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK AUC.lg2 Warning: Removed 15 rows containing missing values (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. NA plotClick: p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw plotClick: NA plotClick: plotClick: nrow dataFiltered(): 144 nrow dataFiltered(): 260 nrow dataFiltered(): 260 nrow dataFiltered(): 260 nrow dataFiltered(): 260 nrow dataFiltered(): 260 nrow dataFiltered(): 260 nrow dataFiltered(): 260 nrow dataFiltered(): 260 NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 104 NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw plotClick: p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_002_autoQC01.raw p33563/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33563_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33563/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33563_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33563/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33563_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_002_autoQC01.raw NA nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 496 Warning: Removed 20 rows containing missing values (`geom_point()`). nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-21 14:39:55.113 | timeMax: 2023-12-05 14:39:54.4 | timeDiff: 1209599.28700018 nFacets: 4 nrow dataFiltered(): 384 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 384 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 384 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 384 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-23 15:15:15.559 | timeMax: 2023-12-05 14:39:54.4 | timeDiff: 1034678.84100008 nFacets: 4 nrow dataFiltered(): 320 Warning: Removed 6 rows containing missing values (`geom_point()`). nrow dataFiltered(): 320 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-26 15:15:35.614 | timeMax: 2023-12-05 14:39:54.4 | timeDiff: 775458.786000013 nFacets: 4 nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 144 input timeRange: 7776000 | timeMin: 2023-11-28 15:15:41.538 | timeMax: 2023-12-05 14:39:54.4 | timeDiff: 602652.861999989 nFacets: 4 nrow dataFiltered(): 112 nrow dataFiltered(): 112 input timeRange: 7776000 | timeMin: 2023-11-28 15:16:04.04 | timeMax: 2023-12-05 14:39:54.4 | timeDiff: 602630.360000134 nFacets: 4 nrow dataFiltered(): 112 input timeRange: 7776000 | timeMin: 2023-10-28 15:16:04.04 | timeMax: 2023-12-05 14:39:54.4 | timeDiff: 3281030.36000013 nFacets: 4 nrow dataFiltered(): 1088 Warning: Removed 10 rows containing missing values (`geom_point()`). p33164/Proteomics/EXPLORIS_2/analytic_20231026/20231026_C33164_007_autoQC01.raw nFacets: 1 nrow dataFiltered(): 208 nFacets: 1 nrow dataFiltered(): 54 NA plotClick: p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw Plotting chromatograms ... Read 22032 items plotClick: NA plotClick: p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 17:00:35.421062 | timeMax: 2023-12-05 17:00:35.421639 | timeDiff: 1814400.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 16:00:35.421 | timeMax: 2023-12-05 16:00:35.422 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 07:57:54.025195 | timeMax: 2023-12-06 07:57:54.026272 | timeDiff: 1814400.0010767 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 06:57:54.025 | timeMax: 2023-12-06 06:57:54.026 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 07:58:22.469775 | timeMax: 2023-12-06 07:58:22.470572 | timeDiff: 1814400.00079656 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-15 06:58:22.47 | timeMax: 2023-12-06 06:58:22.471 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 560 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 117 NA p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw input timeRange: 7776000 | timeMin: 2023-11-04 06:59:43.618 | timeMax: 2023-12-06 06:58:22.471 | timeDiff: 2764718.85299993 nFacets: 1 nrow dataFiltered(): 143 nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-04 07:00:10.637 | timeMax: 2023-12-06 06:58:22.471 | timeDiff: 2764691.83399987 nFacets: 1 nrow dataFiltered(): 143 nFacets: 1 nrow dataFiltered(): 0 autoQC01 module APEX wide nrow: 254023 autoQC01 module APEX long nrow: 552 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 28 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 736 Warning: Removed 28 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). p33577/Proteomics/QEXACTIVE_1/analytic_20231201/20231201_C33577_008_autoQC01.raw NA p33589/Proteomics/QEXACTIVE_1/analytic_20231201/20231201_C33589_013_autoQC01.raw p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_001_autoQC01.raw p33589/Proteomics/QEXACTIVE_1/analytic_20231201/20231201_C33589_013_autoQC01.raw NA p33577/Proteomics/QEXACTIVE_1/analytic_20231201/20231201_C33577_008_autoQC01.raw NA p33577/Proteomics/QEXACTIVE_1/analytic_20231201/20231201_C33577_008_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 10:07:29.902053 | timeMax: 2023-12-06 10:07:29.902625 | timeDiff: 1814400.00057125 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-15 09:07:29.902 | timeMax: 2023-12-06 09:07:29.903 | timeDiff: 1814400.00100017 autoQC01 module APEX wide nrow: 254056 autoQC01 module APEX long nrow: 396 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 144 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-11-29 11:02:26.75072 | timeMax: 2023-12-06 11:02:26.750782 | timeDiff: 604800.000061512 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 11:02:35.609312 | timeMax: 2023-12-06 11:02:35.610188 | timeDiff: 1814400.00087619 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 10:02:35.609 | timeMax: 2023-12-06 10:02:35.61 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 11:06:13.216478 | timeMax: 2023-12-06 11:06:13.217689 | timeDiff: 1814400.00121093 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-15 10:06:13.21648 | timeMax: 2023-12-06 10:06:13.21769 | timeDiff: 1814400.00120997 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 54 input timeRange: 7776000 | timeMin: 2023-11-15 10:06:13.216 | timeMax: 2023-12-06 10:06:13.218 | timeDiff: 1814400.00199986 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 54 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 108 NA NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_013_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_013_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/TIMSTOF_1/spfammatter_20231120/zip/20231120_006_autoQC03_diaPASEF.d.zip plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/TIMSTOF_1/spfammatter_20231120/zip/20231120_005a_autoQC03_diaPASEF.d.zip p3000/Proteomics/TIMSTOF_1/spfammatter_20231120/zip/20231120_005a_autoQC03_diaPASEF.d.zip NA NA p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 11:40:05.654392 | timeMax: 2023-12-06 11:40:05.655333 | timeDiff: 1814400.00094104 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 10:40:05.654 | timeMax: 2023-12-06 10:40:05.655 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 546 nFacets: 1 nrow dataFiltered(): 180 nrow dataFiltered(): 546 nrow dataFiltered(): 180 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 12:10:20.955518 | timeMax: 2023-12-06 12:10:20.956742 | timeDiff: 1814400.0012238 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 11:10:20.956 | timeMax: 2023-12-06 11:10:20.957 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). NA input timeRange: 7776000 | timeMin: 2023-10-18 11:10:22.666 | timeMax: 2023-12-06 11:10:20.957 | timeDiff: 4233598.29100013 nFacets: 4 nrow dataFiltered(): 1360 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1424 input timeRange: 7776000 | timeMin: 2023-09-12 11:10:33.447 | timeMax: 2023-12-06 11:10:20.957 | timeDiff: 7343987.50999999 nFacets: 4 nrow dataFiltered(): 2512 Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 15552000 | timeMin: 2023-09-12 11:10:33.447 | timeMax: 2023-12-06 12:11:03.620244 | timeDiff: 7344030.173244 nFacets: 4 nrow dataFiltered(): 2512 Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 15552000 | timeMin: 2023-09-12 11:10:33.447 | timeMax: 2023-12-06 11:11:03.62 | timeDiff: 7344030.17299986 nFacets: 4 nrow dataFiltered(): 2512 Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 15552000 | timeMin: 2023-07-26 11:11:05.488 | timeMax: 2023-12-06 11:11:03.62 | timeDiff: 11491198.132 nFacets: 4 nrow dataFiltered(): 3568 Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 3936 Warning: Removed 38 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 3088 Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 3520 Warning: Removed 5 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 2016 Warning: Removed 5 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 14:17:31.973504 | timeMax: 2023-12-06 14:17:31.974942 | timeDiff: 1814400.00143766 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-15 13:17:31.974 | timeMax: 2023-12-06 13:17:31.975 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 0 NA p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_001_autoQC03dia.d.zip NA p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_001_autoQC03diaPASEF.d.zip nFacets: 1 nrow dataFiltered(): 39 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 39 nrow dataFiltered(): 39 nrow dataFiltered(): 39 nrow dataFiltered(): 39 NA nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-11-29 14:54:17.73864 | timeMax: 2023-12-06 14:54:17.73869 | timeDiff: 604800.000049353 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 14:54:25.159965 | timeMax: 2023-12-06 14:54:25.160545 | timeDiff: 1814400.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 13:54:25.16 | timeMax: 2023-12-06 13:54:25.161 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 15:03:58.7344 | timeMax: 2023-12-06 15:03:58.734982 | timeDiff: 1814400.00058246 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-15 14:03:58.734 | timeMax: 2023-12-06 14:03:58.735 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 144 input timeRange: 7776000 | timeMin: 2023-10-10 14:04:04.095 | timeMax: 2023-12-06 14:03:58.735 | timeDiff: 4924794.63999987 nFacets: 1 nrow dataFiltered(): 546 nFacets: 1 nrow dataFiltered(): 144 NA p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_005_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_003_S580219_K562_incl_iRT_autoQC03dia.raw NA nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 546 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 1196 nFacets: 1 nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw NA nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 1742 nrow dataFiltered(): 180 nFacets: 1 p33212/Proteomics/FUSION_2/chiawei_20231121/20231121_002_S580219_K562_incl_iRT_3_autoQC03dia.raw p33212/Proteomics/FUSION_2/chiawei_20231124/20231124_002_S580219_K562_incl_iRT_2_autoQC03dia.raw NA nrow dataFiltered(): 180 p33212/Proteomics/FUSION_2/chiawei_20231124/20231124_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA nrow dataFiltered(): 1742 plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. NA p33212/Proteomics/FUSION_2/chiawei_20231121/20231121_002_S580219_K562_incl_iRT_3_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 546 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 546 NA nrow dataFiltered(): 144 nrow dataFiltered(): 546 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 1196 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 144 plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_007_S580219_K562_incl_iRT_2_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 1196 nFacets: 1 nrow dataFiltered(): 351 nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 54 nrow dataFiltered(): 351 p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw Plotting chromatograms ... Read 22032 items NA nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 351 nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 54 nrow dataFiltered(): 54 nFacets: 1 nrow dataFiltered(): 546 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_003_S580219_K562_incl_iRT_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 1196 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 144 NA nFacets: 1 nFacets: 1 nrow dataFiltered(): 180 nrow dataFiltered(): 180 nrow dataFiltered(): 1742 nrow dataFiltered(): 180 p33212/Proteomics/FUSION_2/chiawei_20231124/20231124_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/FUSION_2/chiawei_20231121/20231121_002_S580219_K562_incl_iRT_2_autoQC03dia.raw p33212/Proteomics/FUSION_2/chiawei_20231121/20231121_002_S580219_K562_incl_iRT_3_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231121/20231121_002_S580219_K562_incl_iRT_3_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231121/20231121_002_S580219_K562_incl_iRT_3_autoQC03dia.raw Plotting chromatograms ... Read 22032 items nFacets: 1 nrow dataFiltered(): 351 nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 54 input timeRange: 7776000 | timeMin: 2023-09-20 14:04:15.699 | timeMax: 2023-12-06 14:03:58.735 | timeDiff: 6652783.03600001 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 54 NA p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw nrow dataFiltered(): 416 nrow dataFiltered(): 54 nFacets: 1 nrow dataFiltered(): 728 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 1352 nrow dataFiltered(): 144 nFacets: 1 NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 144 NA nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 728 nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_005_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw NA Plotting chromatograms ... nrow dataFiltered(): 728 nrow dataFiltered(): 144 nrow dataFiltered(): 144 Plotting chromatograms ... nrow dataFiltered(): 728 p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw NA nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_005_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_003_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw Read 22032 items NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw NA p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw p33064/Proteomics/LUMOS_2/pgehrig_20231127/20231127_005_autoQC4L.raw NA nrow dataFiltered(): 728 nrow dataFiltered(): 144 nrow dataFiltered(): 144 nrow dataFiltered(): 728 p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_005_S580219_K562_incl_iRT_autoQC03dia.raw input timeRange: 7776000 | timeMin: 2023-11-17 14:25:44.146 | timeMax: 2023-12-06 14:03:58.735 | timeDiff: 1640294.58899999 nrow dataFiltered(): 130 nFacets: 1 nrow dataFiltered(): 72 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-14 14:39:17.473 | timeMax: 2023-12-06 14:03:58.735 | timeDiff: 1898681.26199985 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_008_autoQC4L_K562.raw nrow dataFiltered(): 156 p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw NA p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw NA input timeRange: 7776000 | timeMin: 2023-10-07 14:39:22.247 | timeMax: 2023-12-06 14:03:58.735 | timeDiff: 5181876.48799992 nFacets: 1 nrow dataFiltered(): 572 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 572 NA nFacets: 1 nrow dataFiltered(): 1248 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 1248 nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_007_S580219_K562_incl_iRT_2_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw NA nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw plotClick: Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw Plotting chromatograms ... Read 22032 items fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw Plotting chromatograms ... NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw nFacets: 4 nrow dataFiltered(): 2192 Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1248 Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1504 Warning: Removed 7 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA nFacets: 4 nrow dataFiltered(): 2192 Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1904 Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1504 Warning: Removed 7 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_006_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw plotClick: NA p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1648 Warning: Removed 44 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1824 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 nrow dataFiltered(): 351 nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 54 Plotting chromatograms ... p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw plotClick: Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw Plotting chromatograms ... fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw nFacets: 1 nrow dataFiltered(): 572 nFacets: 1 nrow dataFiltered(): 144 plotClick: Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 208 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw plotClick: Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw Plotting chromatograms ... fn has changed to /srv/www/htdocs//p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 572 nFacets: 1 nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 16:09:41.351174 | timeMax: 2023-12-06 16:09:41.35207 | timeDiff: 1814400.0008955 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 15:09:41.351 | timeMax: 2023-12-06 15:09:41.352 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-10-09 15:09:42.497 | timeMax: 2023-12-06 15:09:41.352 | timeDiff: 5011198.85500002 nFacets: 4 nrow dataFiltered(): 1792 Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 254067 autoQC01 module APEX long nrow: 1344 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 36 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1792 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 17:18:53.409774 | timeMax: 2023-12-06 17:18:53.410478 | timeDiff: 1814400.00070405 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 16:18:53.41 | timeMax: 2023-12-06 16:18:53.41 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-11-29 18:08:17.259028 | timeMax: 2023-12-06 18:08:17.25908 | timeDiff: 604800.000052691 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 07:51:29.515653 | timeMax: 2023-12-07 07:51:29.516243 | timeDiff: 1814400.00058937 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 06:51:29.516 | timeMax: 2023-12-07 06:51:29.516 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 592 Warning: Removed 19 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231206_C33626_004_autoQC01.raw p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231206_C33626_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 104 NA p33492/Proteomics/QEXACTIVE_1/analytic_20231127/20231127_C33492_013_autoQC4L_K562.raw p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw p33528/Proteomics/QEXACTIVE_1/analytic_20231128/20231128_C33528_005_autoQC4L.raw NA p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-11-30 09:00:05.55474 | timeMax: 2023-12-07 09:00:05.554789 | timeDiff: 604800.000048399 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 09:00:11.305993 | timeMax: 2023-12-07 09:00:11.306581 | timeDiff: 1814400.00058818 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 08:00:11.306 | timeMax: 2023-12-07 08:00:11.307 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). NA p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw Reading raw file: /srv/www/htdocs//p33281/Proteomics/EXPLORIS_2/analytic_20231117_m3_m4/20231117_C33281_077_autoQC01.raw Plotting chromatograms ... Read 22032 items p33552/Proteomics/EXPLORIS_2/analytic_20231130/20231130_C33552_020_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20231130/20231130_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 09:14:14.026647 | timeMax: 2023-12-07 09:14:14.027252 | timeDiff: 1814400.00060511 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 08:14:14.027 | timeMax: 2023-12-07 08:14:14.027 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 7 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA input timeRange: 7776000 | timeMin: 2023-11-26 08:14:14.769 | timeMax: 2023-12-07 08:14:14.027 | timeDiff: 950399.257999897 nFacets: 4 nrow dataFiltered(): 384 Warning: Removed 7 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw plotClick: NA plotClick: p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw plotClick: p33576/Proteomics/LUMOS_2/analytic_20231201/20231201_C33576_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p3000/Proteomics/LUMOS_2/analytics_20231204/20231204_C3000_003_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 78 autoQC01 module APEX wide nrow: 254188 autoQC01 module APEX long nrow: 288 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw plot_click: p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw plot_click: p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_001_autoQC01.raw NA NA p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 10:03:17.528265 | timeMax: 2023-12-07 10:03:17.528858 | timeDiff: 1814400.00059223 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 09:03:17.528 | timeMax: 2023-12-07 09:03:17.529 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 1 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 7 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 10:05:08.890803 | timeMax: 2023-12-07 10:05:08.892313 | timeDiff: 1814400.00150943 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 09:05:08.891 | timeMax: 2023-12-07 09:05:08.892 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 10:33:03.632323 | timeMax: 2023-12-07 10:33:03.632934 | timeDiff: 1814400.00061131 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 09:33:03.632 | timeMax: 2023-12-07 09:33:03.633 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 11:27:29.17869 | timeMax: 2023-12-07 11:27:29.179293 | timeDiff: 1814400.00060272 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 10:27:29.179 | timeMax: 2023-12-07 10:27:29.179 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 0 NA p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_004_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_013_autoQC03dia.d.zip nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw p33552/Proteomics/EXPLORIS_2/analytic_20231130/20231130_C33552_021_autoQC4L.raw p3000/Proteomics/EXPLORIS_2/analytic_20231130/20231130_005_autoQC4L_K562.raw p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_014_autoQC03dia.raw NA p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_014_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 144 p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_004_S580219_K562_incl_iRT_autoQC03dia.raw NA nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 144 p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw NA input timeRange: 7776000 | timeMin: 2023-11-16 10:27:29.179 | timeMax: 2023-12-07 10:27:43.08527 | timeDiff: 1814413.90627003 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 144 input timeRange: 7776000 | timeMin: 2023-11-16 10:27:29.179 | timeMax: 2023-12-07 10:27:43.085 | timeDiff: 1814413.90600014 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 144 p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 0 p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw NA p33528/Proteomics/QEXACTIVE_1/analytic_20231128/20231128_C33528_005_autoQC4L.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 104 NA nFacets: 1 nrow dataFiltered(): 39 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 144 NA p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_004_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_013_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_001_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_013_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_001_autoQC03dia.d.zip NA p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_001_autoQC03dia.d.zip NA p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_001_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 13:56:57.532601 | timeMax: 2023-12-07 13:56:57.533202 | timeDiff: 1814400.00060081 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 12:56:57.533 | timeMax: 2023-12-07 12:56:57.533 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 104 p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 108 NA nrow dataFiltered(): 182 p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 14:01:16.858773 | timeMax: 2023-12-07 14:01:16.859381 | timeDiff: 1814400.00060868 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-11-30 16:00:33.02379 | timeMax: 2023-12-07 16:00:33.023839 | timeDiff: 604800.000048876 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 16:00:38.861861 | timeMax: 2023-12-07 16:00:38.862592 | timeDiff: 1814400.00073195 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 15:00:38.862 | timeMax: 2023-12-07 15:00:38.863 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 7 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 208 input timeRange: 7776000 | timeMin: 2023-10-27 15:00:54.004 | timeMax: 2023-12-07 15:00:38.863 | timeDiff: 3542384.85899997 nFacets: 1 nrow dataFiltered(): 390 nFacets: 1 nrow dataFiltered(): 180 p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA NA nFacets: 1 nrow dataFiltered(): 624 nFacets: 1 nrow dataFiltered(): 144 p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 1274 nFacets: 1 nrow dataFiltered(): 180 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 16:17:59.52475 | timeMax: 2023-12-07 16:17:59.525334 | timeDiff: 1814400.00058413 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 15:17:59.525 | timeMax: 2023-12-07 15:17:59.525 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 976 nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 592 Warning: Removed 19 rows containing missing values (`geom_point()`). NA p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231206_C33626_007_autoQC01.raw p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231206_C33626_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231206_C33626_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231206_C33626_001_autoQC01.raw Plotting chromatograms ... Read 22032 items input timeRange: 7776000 | timeMin: 2023-10-17 15:18:00.288 | timeMax: 2023-12-07 15:17:59.525 | timeDiff: 4406399.23699999 nFacets: 4 nrow dataFiltered(): 1424 Warning: Removed 44 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 286 nrow dataFiltered(): 286 NA NA nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 0 p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_001_autoQC03dia.d.zip nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 156 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 312 nFacets: 1 nrow dataFiltered(): 72 p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_014_autoQC03dia.raw nrow dataFiltered(): 312 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 19:13:30.288007 | timeMax: 2023-12-07 19:13:30.288594 | timeDiff: 1814400.00058627 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 19:13:42.641362 | timeMax: 2023-12-07 19:13:42.642011 | timeDiff: 1814400.00064921 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 09:00:00.315539 | timeMax: 2023-12-08 09:00:00.316283 | timeDiff: 1814400.00074387 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 08:00:00.316 | timeMax: 2023-12-08 08:00:00.316 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 7 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw NA p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 234 p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L_20231207110834.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L_20231207110834.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L_20231207110834.raw Plotting chromatograms ... Read 22032 items NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw Plotting chromatograms ... Read 22032 items NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 09:02:12.509883 | timeMax: 2023-12-08 09:02:12.510462 | timeDiff: 1814400.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 08:02:12.51 | timeMax: 2023-12-08 08:02:12.51 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 496 Warning: Removed 7 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 234 p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA NA input timeRange: 7776000 | timeMin: 2023-11-29 08:02:57.546 | timeMax: 2023-12-08 08:02:12.51 | timeDiff: 777554.963999987 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 54 p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw input timeRange: 7776000 | timeMin: 2023-12-06 08:03:57.064 | timeMax: 2023-12-08 08:02:12.51 | timeDiff: 172695.446000099 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 54 p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: NA plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-01 10:45:47.861768 | timeMax: 2023-12-08 10:45:47.861817 | timeDiff: 604800.000049114 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 10:45:53.594177 | timeMax: 2023-12-08 10:45:53.59476 | timeDiff: 1814400.00058317 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 09:45:53.594 | timeMax: 2023-12-08 09:45:53.595 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 11:02:56.654823 | timeMax: 2023-12-08 11:02:56.655413 | timeDiff: 1814400.00059009 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-17 10:02:56.65482 | timeMax: 2023-12-08 10:02:56.65541 | timeDiff: 1814400.00058985 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 input timeRange: 7776000 | timeMin: 2023-11-17 10:02:56.655 | timeMax: 2023-12-08 10:02:56.655 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 NA nFacets: 1 nrow dataFiltered(): 26 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 208 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 234 nFacets: 1 nrow dataFiltered(): 126 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 11:31:45.946779 | timeMax: 2023-12-08 11:31:45.947375 | timeDiff: 1814400.00059605 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-17 10:31:45.94678 | timeMax: 2023-12-08 10:31:45.94738 | timeDiff: 1814400.00059986 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 input timeRange: 7776000 | timeMin: 2023-11-17 10:31:45.947 | timeMax: 2023-12-08 10:31:45.947 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 nFacets: 1 nrow dataFiltered(): 234 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 126 NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 12:06:37.257711 | timeMax: 2023-12-08 12:06:37.25838 | timeDiff: 1814400.00066948 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 11:06:37.258 | timeMax: 2023-12-08 11:06:37.258 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 12:06:41.926164 | timeMax: 2023-12-08 12:06:41.926781 | timeDiff: 1814400.00061727 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 11:06:41.926 | timeMax: 2023-12-08 11:06:41.927 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 992 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 208 NA nrow dataFiltered(): 144 nrow dataFiltered(): 208 p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_013_autoQC03dia.raw autoQC01 module APEX wide nrow: 254243 autoQC01 module APEX long nrow: 744 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 32 rows containing missing values (`geom_point()`). NA p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw Reading raw file: /srv/www/htdocs//p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw Plotting chromatograms ... Read 22032 items NA p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw NA input timeRange: 7776000 | timeMin: 2023-10-22 11:06:57.262 | timeMax: 2023-12-08 11:06:41.927 | timeDiff: 4060784.66499996 nFacets: 1 nrow dataFiltered(): 884 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 884 p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_021_autoQC4L.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 12:26:48.914424 | timeMax: 2023-12-08 12:26:48.915009 | timeDiff: 1814400.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 11:26:48.914 | timeMax: 2023-12-08 11:26:48.915 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 104 NA nFacets: 1 nrow dataFiltered(): 234 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 208 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 546 nFacets: 1 nrow dataFiltered(): 180 p33176/Proteomics/FUSION_2/chiawei_20231117/20231117_006_autoQC4L_K562.raw p33176/Proteomics/FUSION_2/chiawei_20231117/20231117_006_autoQC4L_K562.raw plotClick: fn has changed to /srv/www/htdocs//p33176/Proteomics/FUSION_2/chiawei_20231117/20231117_006_autoQC4L_K562.raw Reading raw file: /srv/www/htdocs//p33176/Proteomics/FUSION_2/chiawei_20231117/20231117_006_autoQC4L_K562.raw Plotting chromatograms ... Read 22032 items NA p33478/Proteomics/FUSION_2/igonda_20231117/20231117_005_autoQC4L_K562.raw nrow dataFiltered(): 546 nrow dataFiltered(): 546 NA p33176/Proteomics/FUSION_2/chiawei_20231117/20231117_006_autoQC4L_K562.raw p33176/Proteomics/FUSION_2/chiawei_20231117/20231117_006_autoQC4L_K562.raw plotClick: nFacets: 1 nrow dataFiltered(): 234 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 234 nrow dataFiltered(): 234 nrow dataFiltered(): 234 NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw NA p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 nrow dataFiltered(): 126 autoQC01 module APEX wide nrow: 254243 autoQC01 module APEX long nrow: 360 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-01 14:14:34.620638 | timeMax: 2023-12-08 14:14:34.620688 | timeDiff: 604800.000050306 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 14:14:46.644828 | timeMax: 2023-12-08 14:14:46.645408 | timeDiff: 1814400.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 13:14:46.645 | timeMax: 2023-12-08 13:14:46.645 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 15:39:44.886008 | timeMax: 2023-12-08 15:39:44.886597 | timeDiff: 1814400.00058913 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 14:39:44.886 | timeMax: 2023-12-08 14:39:44.887 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 464 Warning: Removed 7 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_2/analytics_20231206/20231207_C3000_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 208 NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp NA plotClick: p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw input timeRange: 7776000 | timeMin: 2023-12-05 14:40:09.061 | timeMax: 2023-12-08 14:39:44.887 | timeDiff: 259175.825999975 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 54 input timeRange: 7776000 | timeMin: 2023-11-30 14:40:27.021 | timeMax: 2023-12-08 14:39:44.887 | timeDiff: 691157.866000175 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 54 plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw Plotting chromatograms ... Read 22032 items plotClick: plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 54 NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp plotClick: plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_001_S580219_K562_incl_iRT_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_002_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw NA input timeRange: 7776000 | timeMin: 2023-11-30 14:40:27.021 | timeMax: 2023-12-08 14:40:33.0045 | timeDiff: 691205.983500004 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 54 nrow dataFiltered(): 54 input timeRange: 7776000 | timeMin: 2023-11-30 14:40:27.021 | timeMax: 2023-12-08 14:40:33.004 | timeDiff: 691205.98300004 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 54 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-01 16:44:58.231171 | timeMax: 2023-12-08 16:44:58.231225 | timeDiff: 604800.000053883 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 16:45:05.884951 | timeMax: 2023-12-08 16:45:05.885536 | timeDiff: 1814400.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt input timeRange: 7776000 | timeMin: 2023-11-17 15:45:05.88495 | timeMax: 2023-12-08 15:45:05.88554 | timeDiff: 1814400.00059009 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-01 20:05:01.670846 | timeMax: 2023-12-08 20:05:01.670901 | timeDiff: 604800.00005579 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 21:49:48.662541 | timeMax: 2023-12-08 21:49:48.663155 | timeDiff: 1814400.00061345 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 20:49:48.663 | timeMax: 2023-12-08 20:49:48.663 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 144 NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 23:44:12.844836 | timeMax: 2023-12-08 23:44:12.845607 | timeDiff: 1814400.00077033 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 22:44:12.845 | timeMax: 2023-12-08 22:44:12.846 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 528 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 546 nFacets: 1 nrow dataFiltered(): 180 p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20231128/20231129_004_autoQC4L_K562_newcolumn.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-18 07:04:04.959712 | timeMax: 2023-12-09 07:04:04.960296 | timeDiff: 1814400.00058389 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-18 06:04:04.96 | timeMax: 2023-12-09 06:04:04.96 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 544 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 162 NA NA plotClick: fn has changed to /srv/www/htdocs//NA p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_001_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: plotClick: p33383/Proteomics/TIMSTOF_1/spfammatter_20231208_/zip/20231208_017_autoQC03dia.d.zip NA plotClick: p33383/Proteomics/TIMSTOF_1/spfammatter_20231208_/zip/20231208_017_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20231208_/zip/20231208_017_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_013_autoQC03dia.d.zip NA p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_001_autoQC03dia.d.zip NA p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_001_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA p33383/Proteomics/TIMSTOF_1/spfammatter_20231205_/zip/20231205_013_autoQC03dia.d.zip NA p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_001_autoQC03dia.d.zip p33584/Proteomics/TIMSTOF_1/wente_20231206_/zip/20231206_004_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-02 14:53:28.068213 | timeMax: 2023-12-09 14:53:28.068272 | timeDiff: 604800.000058413 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-18 14:53:34.511014 | timeMax: 2023-12-09 14:53:34.511594 | timeDiff: 1814400.00057936 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-18 13:53:34.51101 | timeMax: 2023-12-09 13:53:34.51159 | timeDiff: 1814400.00058007 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 90 input timeRange: 7776000 | timeMin: 2023-11-18 13:53:34.511 | timeMax: 2023-12-09 13:53:34.512 | timeDiff: 1814400.00100017 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 90 nFacets: 1 nrow dataFiltered(): 494 nFacets: 1 nrow dataFiltered(): 234 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 13:02:38.762085 | timeMax: 2023-12-10 13:02:38.762672 | timeDiff: 1814400.00058675 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-19 12:02:38.76209 | timeMax: 2023-12-10 12:02:38.76267 | timeDiff: 1814400.00057983 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 90 input timeRange: 7776000 | timeMin: 2023-11-19 12:02:38.762 | timeMax: 2023-12-10 12:02:38.763 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 90 nFacets: 1 nrow dataFiltered(): 442 nFacets: 1 nrow dataFiltered(): 234 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:27:31.262614 | timeMax: 2023-12-11 09:27:31.263701 | timeDiff: 1814400.00108743 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 08:27:31.263 | timeMax: 2023-12-11 08:27:31.264 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 2592000 | timeMin: 2023-11-20 08:27:31.263 | timeMax: 2023-12-11 09:27:42.649822 | timeDiff: 1814411.38682151 nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 104 input timeRange: 2592000 | timeMin: 2023-11-20 08:27:31.263 | timeMax: 2023-12-11 08:27:42.64982 | timeDiff: 1814411.38682008 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 90 input timeRange: 2592000 | timeMin: 2023-11-20 08:27:31.263 | timeMax: 2023-12-11 08:27:42.65 | timeDiff: 1814411.38700008 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 104 nrow dataFiltered(): 104 p33552/Proteomics/EXPLORIS_2/analytic_20231130/20231130_C33552_021_autoQC4L.raw p3000/Proteomics/EXPLORIS_2/analytic_20231130/20231130_005_autoQC4L_K562.raw nrow dataFiltered(): 90 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 180 nrow dataFiltered(): 180 nrow dataFiltered(): 0 nrow dataFiltered(): 180 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 90 Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-04 11:31:42.711467 | timeMax: 2023-12-11 11:31:42.711514 | timeDiff: 604800.000047207 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 11:31:51.812178 | timeMax: 2023-12-11 11:31:51.81326 | timeDiff: 1814400.00108171 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-20 10:31:51.812 | timeMax: 2023-12-11 10:31:51.813 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 432 Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 480 Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1056 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 156 input timeRange: 7776000 | timeMin: 2023-10-27 10:32:19.099 | timeMax: 2023-12-11 10:31:51.813 | timeDiff: 3887972.71399999 nFacets: 1 nrow dataFiltered(): 624 nFacets: 1 nrow dataFiltered(): 144 NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-04 11:35:13.650224 | timeMax: 2023-12-11 11:35:13.650282 | timeDiff: 604800.000058413 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 12:50:57.035713 | timeMax: 2023-12-11 12:50:57.036974 | timeDiff: 1814400.00126076 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-20 11:50:57.036 | timeMax: 2023-12-11 11:50:57.037 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-04 19:08:24.797313 | timeMax: 2023-12-11 19:08:24.797367 | timeDiff: 604800.000053883 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 19:08:30.611661 | timeMax: 2023-12-11 19:08:30.612266 | timeDiff: 1814400.00060439 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 18:08:30.612 | timeMax: 2023-12-11 18:08:30.612 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 10 rows containing missing values (`geom_point()`). NA input timeRange: 7776000 | timeMin: 2023-10-26 18:08:31.773 | timeMax: 2023-12-11 18:08:30.612 | timeDiff: 3974398.83899999 nFacets: 4 nrow dataFiltered(): 1312 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1312 Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 07:01:26.147293 | timeMax: 2023-12-12 07:01:26.147885 | timeDiff: 1814400.00059247 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-21 06:01:26.147 | timeMax: 2023-12-12 06:01:26.148 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 nrow dataFiltered(): 108 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 07:48:30.122916 | timeMax: 2023-12-12 07:48:30.123503 | timeDiff: 1814400.00058746 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-21 06:48:30.123 | timeMax: 2023-12-12 06:48:30.124 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 464 Warning: Removed 14 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 52 p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw p33528/Proteomics/QEXACTIVE_1/analytic_20231128/20231128_C33528_005_autoQC4L.raw p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw autoQC01 module APEX wide nrow: 254562 autoQC01 module APEX long nrow: 348 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). p33648/Proteomics/QEXACTIVE_1/analytic_20231208/20231208_C33648_006_autoQC01.raw p33648/Proteomics/QEXACTIVE_1/analytic_20231208/20231208_C33648_006_autoQC01.raw p33648/Proteomics/QEXACTIVE_1/analytic_20231208/20231208_C33648_006_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 09:11:58.638535 | timeMax: 2023-12-12 09:11:58.639124 | timeDiff: 1814400.00058913 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 08:11:58.639 | timeMax: 2023-12-12 08:11:58.639 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 09:20:53.709816 | timeMax: 2023-12-12 09:20:53.710418 | timeDiff: 1814400.00060129 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 08:20:53.71 | timeMax: 2023-12-12 08:20:53.71 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1072 autoQC01 module APEX wide nrow: 254562 autoQC01 module APEX long nrow: 804 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 42 rows containing missing values (`geom_point()`). NA NA p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw plotClick: plotClick: NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_001_autoQC01.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_001_autoQC01.raw Plotting chromatograms ... NA p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_006_autoQC01.raw p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_006_autoQC01.raw p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast_DDA_OT_OT/20231203_006_autoQC01.raw reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt NA p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw NA p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_047_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_047_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_047_autoQC01.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... NA Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-05 09:34:48.565103 | timeMax: 2023-12-12 09:34:48.565195 | timeDiff: 604800.000091791 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 09:34:58.401576 | timeMax: 2023-12-12 09:34:58.402553 | timeDiff: 1814400.0009768 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 08:34:58.402 | timeMax: 2023-12-12 08:34:58.403 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 NA p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 09:35:17.084486 | timeMax: 2023-12-12 09:35:17.085074 | timeDiff: 1814400.0005877 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-21 08:35:17.084 | timeMax: 2023-12-12 08:35:17.085 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). NA input timeRange: 7776000 | timeMin: 2023-11-09 08:35:17.822 | timeMax: 2023-12-12 08:35:17.085 | timeDiff: 2851199.26300001 nFacets: 4 nrow dataFiltered(): 896 Warning: Removed 10 rows containing missing values (`geom_point()`). NA p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw nFacets: 1 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 156 p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 NA p33274/Proteomics/EXPLORIS_2/analytic_20231123/20231123_C33274_018_autoQC4L.raw p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw NA nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_003_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_003_autoQC01.raw Plotting chromatograms ... Read 22032 items NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 10:07:36.114863 | timeMax: 2023-12-12 10:07:36.115444 | timeDiff: 1814400.00058126 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 09:07:36.115 | timeMax: 2023-12-12 09:07:36.115 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 NA nFacets: 1 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 144 p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw NA NA p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 180 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 72 nrow dataFiltered(): 260 nrow dataFiltered(): 72 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 10:54:28.139704 | timeMax: 2023-12-12 10:54:28.140284 | timeDiff: 1814400.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-21 09:54:28.1397 | timeMax: 2023-12-12 09:54:28.14028 | timeDiff: 1814400.00058007 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-21 09:54:28.14 | timeMax: 2023-12-12 09:54:28.14 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 72 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 180 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 11:09:37.969768 | timeMax: 2023-12-12 11:09:37.970372 | timeDiff: 1814400.00060463 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-21 10:09:37.96977 | timeMax: 2023-12-12 10:09:37.97037 | timeDiff: 1814400.0006001 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-21 10:09:37.97 | timeMax: 2023-12-12 10:09:37.97 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 52 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 234 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-05 12:58:15.589295 | timeMax: 2023-12-12 12:58:15.589345 | timeDiff: 604800.000050068 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 12:58:21.4409 | timeMax: 2023-12-12 12:58:21.441616 | timeDiff: 1814400.00071597 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 11:58:21.441 | timeMax: 2023-12-12 11:58:21.442 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1072 p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw nrow dataFiltered(): 1072 nrow dataFiltered(): 1072 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 13:00:59.714095 | timeMax: 2023-12-12 13:00:59.714677 | timeDiff: 1814400.00058198 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 12:00:59.714 | timeMax: 2023-12-12 12:00:59.715 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_029_autoQC01.raw NA NA p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_042_autoQC01.raw NA p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_036_autoQC01.raw NA nFacets: 5 nrow dataFiltered(): 780 Warning: Removed 12 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nFacets: 6 nrow dataFiltered(): 936 Warning: Removed 17 rows containing missing values (`geom_point()`). Warning: Removed 8 rows containing missing values (`geom_line()`). p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_003_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_003_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_009_autoQC01.raw NA nFacets: 6 nrow dataFiltered(): 600 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_055_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_055_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_055_autoQC01.raw NA nFacets: 6 nrow dataFiltered(): 720 Warning: Removed 13 rows containing missing values (`geom_point()`). p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_005_autoQC01.raw Plotting chromatograms ... Read 22032 items p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_005_autoQC01.raw nFacets: 6 nrow dataFiltered(): 1608 p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 6 nrow dataFiltered(): 720 Warning: Removed 16 rows containing missing values (`geom_point()`). p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 6 nrow dataFiltered(): 984 Warning: Removed 8 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_005_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA plotClick: fn has changed to /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231211/20231211_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231211/20231211_005_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p33665/Proteomics/FUSION_2/aeberle_20231211/20231211_005_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 13:55:34.063427 | timeMax: 2023-12-12 13:55:34.064013 | timeDiff: 1814400.00058579 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 12:55:34.063 | timeMax: 2023-12-12 12:55:34.064 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:08:04.400603 | timeMax: 2023-12-12 14:08:04.401176 | timeDiff: 1814400.00057292 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-21 13:08:04.4006 | timeMax: 2023-12-12 13:08:04.40118 | timeDiff: 1814400.00057983 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-21 13:08:04.401 | timeMax: 2023-12-12 13:08:04.401 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 52 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 234 NA p33591/Proteomics/FUSION_2/hasanali_20231208/20231208_011_autoQC03dia_3.raw plotClick: fn has changed to /srv/www/htdocs//p33591/Proteomics/FUSION_2/hasanali_20231208/20231208_011_autoQC03dia_3.raw Reading raw file: /srv/www/htdocs//p33591/Proteomics/FUSION_2/hasanali_20231208/20231208_011_autoQC03dia_3.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:09:20.461732 | timeMax: 2023-12-12 14:09:20.462317 | timeDiff: 1814400.0005846 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 13:09:20.462 | timeMax: 2023-12-12 13:09:20.462 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p33506/Proteomics/FUSION_2/vomberg_20231124/20231124_001c_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_005_autoQC01.raw p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_005_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 252 nrow dataFiltered(): 52 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_001_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_001_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_001_autoQC03dia.raw Plotting chromatograms ... Read 22032 items plotClick: plotClick: NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp plotClick: fn has changed to /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_001_autoQC03dia.raw p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_001_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_001_autoQC03dia.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 252 nrow dataFiltered(): 252 nrow dataFiltered(): 252 NA nrow dataFiltered(): 252 nrow dataFiltered(): 252 nrow dataFiltered(): 252 p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_001_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:17:44.21577 | timeMax: 2023-12-12 14:17:44.21637 | timeDiff: 1814400.00059938 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 13:17:44.216 | timeMax: 2023-12-12 13:17:44.216 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-05 14:17:46.065526 | timeMax: 2023-12-12 14:17:46.065553 | timeDiff: 604800.000026703 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nrow dataFiltered(): 108 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:17:54.440288 | timeMax: 2023-12-12 14:17:54.440893 | timeDiff: 1814400.00060439 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 nrow dataFiltered(): 52 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 252 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 13:17:54.44 | timeMax: 2023-12-12 13:17:54.441 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 NA input timeRange: 7776000 | timeMin: 2023-11-08 13:17:58.57 | timeMax: 2023-12-12 13:17:54.441 | timeDiff: 2937595.87100005 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 144 input timeRange: 7776000 | timeMin: 2023-10-17 13:18:16.778 | timeMax: 2023-12-12 13:17:54.441 | timeDiff: 4838377.66299987 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 72 input timeRange: 7776000 | timeMin: 2023-09-26 13:18:24.619 | timeMax: 2023-12-12 13:17:54.441 | timeDiff: 6652769.82200003 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 144 NA nrow dataFiltered(): 104 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 216 nFacets: 1 nrow dataFiltered(): 26 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 52 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 252 p33591/Proteomics/FUSION_2/hasanali_20231208/20231208_011_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:30:18.762102 | timeMax: 2023-12-12 14:30:18.762712 | timeDiff: 1814400.00061083 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-21 13:30:18.7621 | timeMax: 2023-12-12 13:30:18.76271 | timeDiff: 1814400.00060987 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-21 13:30:18.762 | timeMax: 2023-12-12 13:30:18.763 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 31536000 | timeMin: 2023-11-21 13:30:18.762 | timeMax: 2023-12-12 14:30:24.272842 | timeDiff: 1814405.51084185 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 31536000 | timeMin: 2023-11-21 13:30:18.762 | timeMax: 2023-12-12 13:30:24.273 | timeDiff: 1814405.51099992 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 31536000 | timeMin: 2023-01-13 13:30:25.521 | timeMax: 2023-12-12 13:30:24.273 | timeDiff: 28771198.7520001 nFacets: 1 nrow dataFiltered(): 1625 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 315360000 | timeMin: 2023-01-13 13:30:25.521 | timeMax: 2023-12-12 14:30:33.031135 | timeDiff: 28771207.5101349 nFacets: 1 nrow dataFiltered(): 1625 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 315360000 | timeMin: 2023-01-13 13:30:25.521 | timeMax: 2023-12-12 13:30:33.031 | timeDiff: 28771207.51 nFacets: 1 nrow dataFiltered(): 1625 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 1794 nFacets: 1 nrow dataFiltered(): 0 input timeRange: 315360000 | timeMin: 2014-01-05 13:30:34.285 | timeMax: 2023-12-12 13:30:33.031 | timeDiff: 313459198.746 nFacets: 1 nrow dataFiltered(): 5980 nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 34256 Warning: Removed 612 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:47:03.186418 | timeMax: 2023-12-12 14:47:03.187004 | timeDiff: 1814400.00058603 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-21 13:47:03.18642 | timeMax: 2023-12-12 13:47:03.187 | timeDiff: 1814400.00058007 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-21 13:47:03.186 | timeMax: 2023-12-12 13:47:03.187 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 26 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 26 nrow dataFiltered(): 26 NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2023-11-21 13:47:03.186 | timeMax: 2023-12-12 13:47:04.98084 | timeDiff: 1814401.7948401 nFacets: 1 nrow dataFiltered(): 26 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 26 input timeRange: 7776000 | timeMin: 2023-11-21 13:47:03.186 | timeMax: 2023-12-12 13:47:04.981 | timeDiff: 1814401.79499984 nFacets: 1 nrow dataFiltered(): 26 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:50:30.010667 | timeMax: 2023-12-12 14:50:30.011374 | timeDiff: 1814400.0007062 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 13:50:30.011 | timeMax: 2023-12-12 13:50:30.011 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 plotClick: fn has changed to /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw Plotting chromatograms ... Read 22032 items p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw NA NA input timeRange: 7776000 | timeMin: 2023-10-09 13:50:32.544 | timeMax: 2023-12-12 13:50:30.011 | timeDiff: 5529597.46700001 nFacets: 1 nrow dataFiltered(): 351 nFacets: 1 nrow dataFiltered(): 108 plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Warning: Error in [: only 0's may be mixed with negative subscripts 174: FUN 173: lapply 172: .pickPeak.rawrrChromatogram 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotProfiles 1: runApp p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 208 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw NA p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw Plotting chromatograms ... Read 22032 items nFacets: 1 nrow dataFiltered(): 676 nFacets: 1 nrow dataFiltered(): 216 p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_007_autoQC4L.raw input timeRange: 31536000 | timeMin: 2023-10-09 13:50:32.544 | timeMax: 2023-12-12 14:51:39.769857 | timeDiff: 5529667.22585702 nFacets: 1 nrow dataFiltered(): 676 nFacets: 1 nrow dataFiltered(): 216 input timeRange: 31536000 | timeMin: 2023-10-09 13:50:32.544 | timeMax: 2023-12-12 13:51:39.77 | timeDiff: 5529667.22600007 nFacets: 1 nrow dataFiltered(): 676 nFacets: 1 nrow dataFiltered(): 216 input timeRange: 31536000 | timeMin: 2023-07-17 13:51:39.783 | timeMax: 2023-12-12 13:51:39.77 | timeDiff: 12787199.987 nFacets: 1 nrow dataFiltered(): 1508 nFacets: 1 nrow dataFiltered(): 216 input timeRange: 31536000 | timeMin: 2023-01-19 13:51:42.626 | timeMax: 2023-06-16 13:51:42.613 | timeDiff: 12787199.987 nFacets: 1 nrow dataFiltered(): 1378 nFacets: 1 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2023-01-19 13:51:42.626 | timeMax: 2023-12-12 13:51:45.01512 | timeDiff: 28252802.3891201 nFacets: 1 nrow dataFiltered(): 3250 nFacets: 1 nrow dataFiltered(): 216 NA input timeRange: 31536000 | timeMin: 2023-01-19 13:51:42.626 | timeMax: 2023-12-12 13:51:45.015 | timeDiff: 28252802.3890002 nFacets: 1 nrow dataFiltered(): 3250 nFacets: 1 nrow dataFiltered(): 216 nFacets: 1 nrow dataFiltered(): 1599 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 26 nrow dataFiltered(): 26 nFacets: 1 nrow dataFiltered(): 1352 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1781 nFacets: 1 nrow dataFiltered(): 0 p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw nFacets: 1 nrow dataFiltered(): 6539 nFacets: 1 nrow dataFiltered(): 144 nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 180 nFacets: 1 nrow dataFiltered(): 1781 nFacets: 1 nrow dataFiltered(): 0 p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw nrow dataFiltered(): 1781 nFacets: 1 nrow dataFiltered(): 6539 nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 6539 nrow dataFiltered(): 6539 p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231204/20231204_056_autoQC03dda.raw NA p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw input timeRange: 7776000 | timeMin: 2023-11-15 13:48:08.978 | timeMax: 2023-12-12 13:47:04.981 | timeDiff: 2332736.00300002 nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 52 nrow dataFiltered(): 52 nrow dataFiltered(): 52 NA p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_005_autoQC4L.raw p33066/Proteomics/EXPLORIS_1/pmanet_20231128/20231128_044_autoQC4L.raw p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_005_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_005_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33437/Proteomics/EXPLORIS_1/analytic_20231116/20231116_C33437_005_autoQC4L.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 14:55:03.013923 | timeMax: 2023-12-12 14:55:03.014518 | timeDiff: 1814400.00059462 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-21 13:55:03.01392 | timeMax: 2023-12-12 13:55:03.01452 | timeDiff: 1814400.0006001 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-21 13:55:03.014 | timeMax: 2023-12-12 13:55:03.015 | timeDiff: 1814400.00100017 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 NA p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw nrow dataFiltered(): 108 p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 26 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 26 nrow dataFiltered(): 26 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw NA nrow dataFiltered(): 26 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 15:38:48.6954 | timeMax: 2023-12-12 15:38:48.696086 | timeDiff: 1814400.00068688 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp autoQC01 module APEX wide nrow: 254628 input timeRange: 7776000 | timeMin: 2023-11-21 14:38:48.6954 | timeMax: 2023-12-12 14:38:48.69609 | timeDiff: 1814400.00068998 autoQC01 module APEX long nrow: 468 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 14:38:48.695 | timeMax: 2023-12-12 14:38:48.696 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1088 nrow dataFiltered(): 1088 nrow dataFiltered(): 1088 p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2023-12-08 14:38:54.273 | timeMax: 2023-12-12 14:38:48.696 | timeDiff: 345594.423000097 nFacets: 4 nrow dataFiltered(): 144 nrow dataFiltered(): 144 p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_008_autoQC01.raw p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_008_autoQC01.raw p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA input timeRange: 7776000 | timeMin: 2023-11-09 14:39:30.264 | timeMax: 2023-12-12 14:38:48.696 | timeDiff: 2851158.43200016 nFacets: 4 nrow dataFiltered(): 1344 input timeRange: 7776000 | timeMin: 2023-11-09 14:39:30.264 | timeMax: 2023-11-24 14:40:21.249 | timeDiff: 1296050.98500013 nFacets: 4 nrow dataFiltered(): 256 p33171/Proteomics/LUMOS_1/analytic_20231110/20231110_C33171_001_autoQC01_20231111144917.raw plotClick: fn has changed to /srv/www/htdocs//p33171/Proteomics/LUMOS_1/analytic_20231110/20231110_C33171_001_autoQC01_20231111144917.raw Reading raw file: /srv/www/htdocs//p33171/Proteomics/LUMOS_1/analytic_20231110/20231110_C33171_001_autoQC01_20231111144917.raw Plotting chromatograms ... Read 22032 items NA input timeRange: 7776000 | timeMin: 2023-10-16 14:40:25.832 | timeMax: 2023-11-24 14:40:21.249 | timeDiff: 3369595.41700006 nFacets: 4 nrow dataFiltered(): 1008 Warning: Removed 4 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_1/roschi_20231020_DIA_yeast_mouse/20231020_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231020_DIA_yeast_mouse/20231020_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231020_DIA_yeast_mouse/20231020_012_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 26 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-09-22 14:41:08.333 | timeMax: 2023-11-24 14:40:21.249 | timeDiff: 5443152.91600013 nFacets: 4 nrow dataFiltered(): 1440 Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-22 14:41:08.333 | timeMax: 2023-10-19 14:41:43.159 | timeDiff: 2332834.82599998 nFacets: 4 nrow dataFiltered(): 560 p3000/Proteomics/LUMOS_1/roschi_20231006_XLINK_BSA_DSPP_TBDSPP/20231006_001_autoQC01.raw p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_005_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA nrow dataFiltered(): 560 nrow dataFiltered(): 560 nrow dataFiltered(): 560 input timeRange: 7776000 | timeMin: 2023-09-22 14:41:08.333 | timeMax: 2023-12-12 14:41:47.27577 | timeDiff: 6998438.94277 nFacets: 4 nrow dataFiltered(): 2528 Warning: Removed 8 rows containing missing values (`geom_point()`). nrow dataFiltered(): 2528 Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-09-22 14:41:08.333 | timeMax: 2023-12-12 14:41:47.276 | timeDiff: 6998438.94300008 nFacets: 4 nrow dataFiltered(): 2528 Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 14:46:11.899 | timeMax: 2023-12-12 14:41:47.276 | timeDiff: 1986935.37700009 nFacets: 4 nrow dataFiltered(): 1088 input timeRange: 7776000 | timeMin: 2023-11-15 14:46:24.238 | timeMax: 2023-12-12 14:41:47.276 | timeDiff: 2332523.03800011 nFacets: 4 nrow dataFiltered(): 1168 nrow dataFiltered(): 1168 nrow dataFiltered(): 1168 nrow dataFiltered(): 1168 nrow dataFiltered(): 1168 nrow dataFiltered(): 1168 nrow dataFiltered(): 1168 p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast/20231203_001_autoQC01.raw p33544/Proteomics/LUMOS_1/roschi_20231203_new_yeast/20231203_001_autoQC01.raw NA p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123124131.raw NA p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125003727.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231125003727.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01_20231124083506.raw p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_020_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231127_afterCalib/20231127_002_autoQC01.raw NA p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231124053046.raw NA p30165/Proteomics/LUMOS_1/eichenberger_20231205/20231205_036_autoQC01.raw p30165/Proteomics/LUMOS_1/eichenberger_20231205/20231205_036_autoQC01.raw p30165/Proteomics/LUMOS_1/eichenberger_20231205/20231205_036_autoQC01.raw p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_008_autoQC01.raw p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_008_autoQC01.raw p30165/Proteomics/LUMOS_1/eichenberger_20231205/20231205_036_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30165/Proteomics/LUMOS_1/eichenberger_20231205/20231205_036_autoQC01.raw Reading raw file: /srv/www/htdocs//p30165/Proteomics/LUMOS_1/eichenberger_20231205/20231205_036_autoQC01.raw Plotting chromatograms ... Read 22032 items p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123235427.raw plotClick: fn has changed to /srv/www/htdocs//p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123235427.raw Reading raw file: /srv/www/htdocs//p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231123235427.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 16:16:32.736921 | timeMax: 2023-12-12 16:16:32.737513 | timeDiff: 1814400.00059199 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 15:16:32.737 | timeMax: 2023-12-12 15:16:32.738 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 39 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA nrow dataFiltered(): 39 nrow dataFiltered(): 39 p3000/Proteomics/EXPLORIS_1/lkunz_20231212/20231212_002_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2023-11-13 15:16:49.667 | timeMax: 2023-12-12 15:16:32.738 | timeDiff: 2505583.07099986 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 78 nrow dataFiltered(): 78 nrow dataFiltered(): 78 NA nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 nrow dataFiltered(): 104 nrow dataFiltered(): 104 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 16:39:07.577331 | timeMax: 2023-12-12 16:39:07.577942 | timeDiff: 1814400.00061107 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 15:39:07.577 | timeMax: 2023-12-12 15:39:07.578 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 39 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-11-05 15:39:09.47 | timeMax: 2023-12-12 15:39:07.578 | timeDiff: 3196798.10800004 nFacets: 1 nrow dataFiltered(): 117 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 117 p3000/Proteomics/EXPLORIS_1/lkunz_20231212/20231212_002_autoQC03dda.raw nrow dataFiltered(): 117 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 182 nrow dataFiltered(): 182 nrow dataFiltered(): 182 p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw input timeRange: 15552000 | timeMin: 2023-11-05 15:39:09.47 | timeMax: 2023-12-12 16:41:16.051359 | timeDiff: 3196926.58135939 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 182 input timeRange: 15552000 | timeMin: 2023-11-05 15:39:09.47 | timeMax: 2023-12-12 15:41:16.051 | timeDiff: 3196926.58100009 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 108 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 17:06:17.01226 | timeMax: 2023-12-12 17:06:17.012838 | timeDiff: 1814400.00057864 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-21 16:06:17.012 | timeMax: 2023-12-12 16:06:17.013 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). NA p33599/Proteomics/EXPLORIS_2/analytic_20231212/20231212_C33599_001_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1104 p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw NA nrow dataFiltered(): 1104 nrow dataFiltered(): 1104 nrow dataFiltered(): 1104 nrow dataFiltered(): 1104 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-06 08:07:59.250463 | timeMax: 2023-12-13 08:07:59.250516 | timeDiff: 604800.000053644 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 08:08:30.468287 | timeMax: 2023-12-13 08:08:30.468893 | timeDiff: 1814400.0006063 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 608 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 07:08:30.468 | timeMax: 2023-12-13 07:08:30.469 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 608 Warning: Removed 6 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 08:08:35.08948 | timeMax: 2023-12-13 08:08:35.090082 | timeDiff: 1814400.00060225 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 608 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 07:08:35.089 | timeMax: 2023-12-13 07:08:35.09 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 608 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1136 p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw NA p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_001_autoQC01.raw NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 1136 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 260 NA NA p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_005_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_005_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 09:14:43.220497 | timeMax: 2023-12-13 09:14:43.221076 | timeDiff: 1814400.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 91 input timeRange: 7776000 | timeMin: 2023-11-22 08:14:43.2205 | timeMax: 2023-12-13 08:14:43.22108 | timeDiff: 1814400.00058007 nFacets: 1 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-22 08:14:43.221 | timeMax: 2023-12-13 08:14:43.221 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 108 NA nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 180 p33591/Proteomics/FUSION_2/hasanali_20231208/20231208_011_autoQC03dda.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 09:27:33.839336 | timeMax: 2023-12-13 09:27:33.839942 | timeDiff: 1814400.00060534 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 91 input timeRange: 7776000 | timeMin: 2023-11-22 08:27:33.83934 | timeMax: 2023-12-13 08:27:33.83994 | timeDiff: 1814400.00059986 nFacets: 1 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-22 08:27:33.839 | timeMax: 2023-12-13 08:27:33.84 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 91 nrow dataFiltered(): 91 NA p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 52 nrow dataFiltered(): 52 nrow dataFiltered(): 52 NA nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231212/20231212_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 11:42:54.553326 | timeMax: 2023-12-13 11:42:54.554053 | timeDiff: 1814400.00072694 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 10:42:54.553 | timeMax: 2023-12-13 10:42:54.554 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1136 nrow dataFiltered(): 1136 nrow dataFiltered(): 1136 p25334/Proteomics/LUMOS_1/dlesli_20231130_DLP227/20231130_006_autoQC01.raw nrow dataFiltered(): 1136 nrow dataFiltered(): 1136 NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_002_autoQC01.raw NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 416 nrow dataFiltered(): 180 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-06 14:05:59.270332 | timeMax: 2023-12-13 14:05:59.270389 | timeDiff: 604800.000056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 14:06:05.020121 | timeMax: 2023-12-13 14:06:05.02072 | timeDiff: 1814400.00059915 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 13:06:05.02 | timeMax: 2023-12-13 13:06:05.021 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 NA p33599/Proteomics/EXPLORIS_2/analytic_20231212/20231212_C33599_019_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 180 nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 432 Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1136 input timeRange: 7776000 | timeMin: 2023-09-20 13:06:05.891 | timeMax: 2023-12-13 13:06:05.021 | timeDiff: 7257599.12999988 nFacets: 4 nrow dataFiltered(): 2656 Warning: Removed 5 rows containing missing values (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-09-20 13:06:05.891 | timeMax: 2023-12-13 14:06:57.955914 | timeDiff: 7257652.06491423 nFacets: 4 nrow dataFiltered(): 2656 Warning: Removed 5 rows containing missing values (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-09-20 13:06:05.891 | timeMax: 2023-12-13 13:06:57.956 | timeDiff: 7257652.06500006 nFacets: 4 nrow dataFiltered(): 2656 Warning: Removed 5 rows containing missing values (`geom_point()`). input timeRange: 31536000 | timeMin: 2022-12-27 13:06:59.195 | timeMax: 2023-12-13 13:06:57.956 | timeDiff: 30326398.7610002 nFacets: 4 nrow dataFiltered(): 9504 Warning: Removed 9 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 7968 Warning: Removed 48 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 8688 Warning: Removed 50 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2022-12-27 13:06:59.195 | timeMax: 2023-12-13 14:07:35.966882 | timeDiff: 30326436.7718821 nFacets: 4 nrow dataFiltered(): 8688 Warning: Removed 50 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2022-12-27 13:06:59.195 | timeMax: 2023-12-13 13:07:35.967 | timeDiff: 30326436.7720001 nFacets: 4 nrow dataFiltered(): 8688 Warning: Removed 50 rows containing missing values (`geom_point()`). input timeRange: 94608000 | timeMin: 2021-04-06 13:07:37.438 | timeMax: 2023-12-13 13:07:35.967 | timeDiff: 84758398.529 nFacets: 4 nrow dataFiltered(): 14880 Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 14880 Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 14880 Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA input timeRange: 189216000 | timeMin: 2021-04-06 13:07:37.438 | timeMax: 2023-12-13 14:08:08.393342 | timeDiff: 84758430.9553423 nFacets: 4 nrow dataFiltered(): 14880 Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 189216000 | timeMin: 2021-04-06 13:07:37.438 | timeMax: 2023-12-13 13:08:08.393 | timeDiff: 84758430.9549999 nFacets: 4 nrow dataFiltered(): 14880 Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 26064 Warning: Removed 594 rows containing missing values (`geom_point()`). input timeRange: 189216000 | timeMin: 2018-07-24 13:08:09.812 | timeMax: 2023-12-13 13:08:08.393 | timeDiff: 170035198.581 nFacets: 4 nrow dataFiltered(): 34272 Warning: Removed 612 rows containing missing values (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange input timeRange: 189216000 | timeMin: 2023-04-26 13:08:14.748 | timeMax: 2023-12-13 13:08:08.393 | timeDiff: 19958393.645 nFacets: 4 nrow dataFiltered(): 5312 Warning: Removed 249 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 189216000 | timeMin: 2023-06-19 13:08:37.625 | timeMax: 2023-12-13 13:08:08.393 | timeDiff: 15292770.7679999 nFacets: 4 nrow dataFiltered(): 4080 Warning: Removed 176 rows containing missing values (`geom_point()`). Warning: Removed 26 rows containing missing values (`geom_line()`). Warning in observe() : timeDiff is higher than timeRange input timeRange: 31536000 | timeMin: 2023-06-19 13:08:37.625 | timeMax: 2023-12-13 14:08:49.263463 | timeDiff: 15292811.6384628 nFacets: 4 nrow dataFiltered(): 4080 Warning: Removed 176 rows containing missing values (`geom_point()`). Warning: Removed 26 rows containing missing values (`geom_line()`). input timeRange: 31536000 | timeMin: 2023-06-19 13:08:37.625 | timeMax: 2023-12-13 13:08:49.263 | timeDiff: 15292811.638 nFacets: 4 nrow dataFiltered(): 4080 Warning: Removed 176 rows containing missing values (`geom_point()`). Warning: Removed 26 rows containing missing values (`geom_line()`). input timeRange: 15552000 | timeMin: 2023-06-19 13:08:37.625 | timeMax: 2023-12-13 14:08:51.874609 | timeDiff: 15292814.2496095 nFacets: 4 nrow dataFiltered(): 4080 Warning: Removed 176 rows containing missing values (`geom_point()`). Warning: Removed 26 rows containing missing values (`geom_line()`). input timeRange: 15552000 | timeMin: 2023-06-19 13:08:37.625 | timeMax: 2023-12-13 13:08:51.875 | timeDiff: 15292814.25 nFacets: 4 nrow dataFiltered(): 4080 Warning: Removed 176 rows containing missing values (`geom_point()`). Warning: Removed 26 rows containing missing values (`geom_line()`). input timeRange: 15552000 | timeMin: 2023-10-29 13:08:53.175 | timeMax: 2023-12-13 13:08:51.875 | timeDiff: 3887998.70000005 nFacets: 4 nrow dataFiltered(): 1264 Warning: Removed 40 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-10-29 13:08:53.175 | timeMax: 2023-12-13 14:08:59.816501 | timeDiff: 3888006.64150119 nFacets: 4 nrow dataFiltered(): 1264 Warning: Removed 40 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-10-29 13:08:53.175 | timeMax: 2023-12-13 13:08:59.817 | timeDiff: 3888006.64199996 nFacets: 4 nrow dataFiltered(): 1264 Warning: Removed 40 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-06 14:36:30.95258 | timeMax: 2023-12-13 14:36:30.952629 | timeDiff: 604800.000049591 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nrow dataFiltered(): 1264 Warning: Removed 40 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-06 16:11:12.843251 | timeMax: 2023-12-13 16:11:12.843304 | timeDiff: 604800.000052929 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 16:11:19.048549 | timeMax: 2023-12-13 16:11:19.049267 | timeDiff: 1814400.0007174 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 15:11:19.049 | timeMax: 2023-12-13 15:11:19.049 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1136 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 16:27:47.066295 | timeMax: 2023-12-13 16:27:47.066919 | timeDiff: 1814400.00062394 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 15:27:47.066 | timeMax: 2023-12-13 15:27:47.067 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 NA p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw p33437/Proteomics/EXPLORIS_2/analytic_20231207/20231207_C33437_017_autoQC03dia.raw p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_014_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/EXPLORIS_1/analytic_20231203/20231203_C33212_011_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 p33437/Proteomics/EXPLORIS_2/analytic_20231207/20231207_C33437_017_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_014_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_014_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_014_autoQC03dia.raw NA Plotting chromatograms ... p33437/Proteomics/EXPLORIS_2/analytic_20231207/20231207_C33437_017_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33437/Proteomics/EXPLORIS_2/analytic_20231207/20231207_C33437_017_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p33437/Proteomics/EXPLORIS_2/analytic_20231207/20231207_C33437_017_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 126 Plotting chromatograms ... NA p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw NA Plotting chromatograms ... nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 90 Plotting chromatograms ... p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_005_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_005_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 17:00:51.151293 | timeMax: 2023-12-13 17:00:51.151876 | timeDiff: 1814400.0005827 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 16:00:51.151 | timeMax: 2023-12-13 16:00:51.152 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 2 rows containing missing values (`geom_point()`). p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_003_autoQC01.raw Reading raw file: /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231212/20231212_003_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-22 18:06:30.623216 | timeMax: 2023-12-13 18:06:30.623794 | timeDiff: 1814400.00057817 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-22 17:06:30.623 | timeMax: 2023-12-13 17:06:30.624 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 90 input timeRange: 7776000 | timeMin: 2023-11-10 17:06:48.081 | timeMax: 2023-12-01 17:06:48.081 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 312 nFacets: 1 nrow dataFiltered(): 72 input timeRange: 7776000 | timeMin: 2023-11-10 17:06:48.081 | timeMax: 2023-12-13 17:07:26.85635 | timeDiff: 2851238.77535009 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 162 input timeRange: 7776000 | timeMin: 2023-11-08 17:07:26.856 | timeMax: 2023-12-13 17:07:26.85635 | timeDiff: 3024000.00035024 nFacets: 1 nrow dataFiltered(): 468 nFacets: 1 nrow dataFiltered(): 162 input timeRange: 7776000 | timeMin: 2023-10-04 17:07:30.764 | timeMax: 2023-12-13 17:07:26.856 | timeDiff: 6047996.09200001 nFacets: 1 nrow dataFiltered(): 1352 nFacets: 1 nrow dataFiltered(): 162 nFacets: 1 nrow dataFiltered(): 429 nFacets: 1 nrow dataFiltered(): 0 p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC4Ldda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC4Ldda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC4Ldda.raw Plotting chromatograms ... Read 22032 items nFacets: 1 nrow dataFiltered(): 390 nFacets: 1 nrow dataFiltered(): 108 NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotTools 1: runApp p3000/Proteomics/EXPLORIS_2/antdit_20231129/20231129_002_autoQC4L_K562.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/antdit_20231129/20231129_002_autoQC4L_K562.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/antdit_20231129/20231129_002_autoQC4L_K562.raw Plotting chromatograms ... Read 22032 items NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotTools 1: runApp Warning in normalizePath(rawfile) : path[1]="/srv/www/htdocs//NA": No such file or directory Warning: Error in .checkRawFile: File '/srv/www/htdocs//NA' is not available. 100: stop 99: .checkRawFile 98: readFileHeader 97: renderTable 96: func 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-fileHeader 1: runApp NA p33566/Proteomics/QEXACTIVE_1/analytic_20231129/20231129_C33566_009_autoQC4L.raw p33528/Proteomics/QEXACTIVE_1/analytic_20231128/20231128_C33528_005_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 08:05:03.631158 | timeMax: 2023-12-14 08:05:03.631753 | timeDiff: 1814400.00059509 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 07:05:03.631 | timeMax: 2023-12-14 07:05:03.632 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 14 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 104 NA p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC03dda.raw p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC4Ldda_20231212140029.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC03dda.raw p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC4Ldda_20231212140029.raw p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_005_autoQC4Ldda.raw autoQC01 module APEX wide nrow: 254881 autoQC01 module APEX long nrow: 336 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). p3000/Proteomics/QEXACTIVE_1/analytic_20231208/20231212_C3000_001_autoQC01_20231212131623.raw p33712/Proteomics/QEXACTIVE_1/analytic_20231212/20231212_C33712_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-07 08:42:01.491431 | timeMax: 2023-12-14 08:42:01.491495 | timeDiff: 604800.000063658 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 08:46:13.80034 | timeMax: 2023-12-14 08:46:13.801006 | timeDiff: 1814400.00066662 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 07:46:13.8 | timeMax: 2023-12-14 07:46:13.801 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 08:56:57.448795 | timeMax: 2023-12-14 08:56:57.44938 | timeDiff: 1814400.00058532 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 07:56:57.449 | timeMax: 2023-12-14 07:56:57.449 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 2 rows containing missing values (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_007_autoQC01.raw p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_007_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_001_autoQC01.raw NA nrow dataFiltered(): 672 Warning: Removed 2 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-07 09:10:58.283381 | timeMax: 2023-12-14 09:10:58.283431 | timeDiff: 604800.000050783 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 09:56:39.91514 | timeMax: 2023-12-14 09:56:39.915731 | timeDiff: 1814400.00059152 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 08:56:39.915 | timeMax: 2023-12-14 08:56:39.916 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1152 NA nFacets: 4 nrow dataFiltered(): 448 Warning: Removed 14 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 09:58:00.213345 | timeMax: 2023-12-14 09:58:00.213944 | timeDiff: 1814400.00059938 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 08:58:00.213 | timeMax: 2023-12-14 08:58:00.214 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-10-25 08:56:40.948 | timeMax: 2023-12-14 08:56:39.916 | timeDiff: 4319998.96799994 nFacets: 4 nrow dataFiltered(): 1376 Warning: Removed 41 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1152 NA nFacets: 4 nrow dataFiltered(): 1040 Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1456 Warning: Removed 6 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1152 nrow dataFiltered(): 1152 nrow dataFiltered(): 1152 nrow dataFiltered(): 1152 nFacets: 4 nrow dataFiltered(): 1136 Warning: Removed 2 rows containing missing values (`geom_point()`). p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_015_autoQC01.raw p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_015_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_015_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_015_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 1152 nrow dataFiltered(): 1152 nrow dataFiltered(): 1152 nrow dataFiltered(): 1152 p3000/Proteomics/LUMOS_1/pgehrig_20231005_autoQC/20231130_30_autoQC01.raw p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231212_autoQC/20231212_004_autoQC01.raw NA nrow dataFiltered(): 1152 nrow dataFiltered(): 1152 p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 252 nrow dataFiltered(): 1430 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 10:46:58.220744 | timeMax: 2023-12-14 10:46:58.221335 | timeDiff: 1814400.00059104 nFacets: 6 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 6 nrow dataFiltered(): 1032 Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-23 09:46:58.221 | timeMax: 2023-12-14 09:46:58.221 | timeDiff: 1814400 nFacets: 6 nrow dataFiltered(): 1032 Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 6 nrow dataFiltered(): 984 Warning: Removed 8 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 180 nrow dataFiltered(): 416 NA autoQC01 module APEX wide nrow: 254892 autoQC01 module APEX long nrow: 492 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 18 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 10:52:18.276844 | timeMax: 2023-12-14 10:52:18.27746 | timeDiff: 1814400.00061655 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 09:52:18.277 | timeMax: 2023-12-14 09:52:18.277 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 656 Warning: Removed 4 rows containing missing values (`geom_point()`). nrow dataFiltered(): 656 Warning: Removed 2 rows containing missing values (`geom_point()`). NA p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_007_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 4 nrow dataFiltered(): 1168 nrow dataFiltered(): 1168 p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_36_autoQC01.raw NA nrow dataFiltered(): 1168 p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_029_autoQC01.raw p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_029_autoQC01.raw p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_029_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_029_autoQC01.raw Reading raw file: /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_029_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 11:39:53.743599 | timeMax: 2023-12-14 11:39:53.744316 | timeDiff: 1814400.00071645 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-23 10:39:53.7436 | timeMax: 2023-12-14 10:39:53.74432 | timeDiff: 1814400.00072002 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 input timeRange: 7776000 | timeMin: 2023-11-23 10:39:53.744 | timeMax: 2023-12-14 10:39:53.744 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 108 nFacets: 1 nrow dataFiltered(): 65 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 65 nrow dataFiltered(): 65 p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_001a_autoQC03dda_rep.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20231212/20231212_007_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20231212/20231212_002_autoQC03dda.raw NA nrow dataFiltered(): 1136 Warning: Removed 2 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-07 15:16:51.85817 | timeMax: 2023-12-14 15:16:51.85822 | timeDiff: 604800.000050068 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 15:17:00.01806 | timeMax: 2023-12-14 15:17:00.018805 | timeDiff: 1814400.00074482 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 14:17:00.018 | timeMax: 2023-12-14 14:17:00.019 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 688 Warning: Removed 6 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 17:02:50.524136 | timeMax: 2023-12-14 17:02:50.52474 | timeDiff: 1814400.00060415 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 704 Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-23 16:02:50.524 | timeMax: 2023-12-14 16:02:50.525 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 704 Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 126 p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_006_autoQC03dda_autoQC4L.raw Plotting chromatograms ... Read 22032 items p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning: Error in lm.wfit: 0 (non-NA) cases 176: stop 175: lm.wfit 174: lm 173: .fitChromatographicPeak 172: FUN 171: lapply 170: .fitPeak.rawrrChromatogram 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotProfiles 1: runApp input timeRange: 7776000 | timeMin: 2023-11-23 16:02:50.524 | timeMax: 2023-12-14 16:02:51.98451 | timeDiff: 1814401.46051002 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-23 16:02:50.524 | timeMax: 2023-12-14 16:02:51.985 | timeDiff: 1814401.46099997 nFacets: 1 nrow dataFiltered(): 182 nFacets: 1 nrow dataFiltered(): 126 nFacets: 4 nrow dataFiltered(): 432 Warning: Removed 7 rows containing missing values (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange NA input timeRange: 7776000 | timeMin: 2023-12-03 16:03:22.135 | timeMax: 2023-12-14 16:02:51.985 | timeDiff: 950369.849999905 nFacets: 4 nrow dataFiltered(): 96 Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 72 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 1209600 | timeMin: 2023-11-23 17:03:54.412943 | timeMax: 2023-12-14 17:03:54.41354 | timeDiff: 1814400.00059652 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 1209600 | timeMin: 2023-11-30 17:03:55.416956 | timeMax: 2023-12-14 17:03:54.41354 | timeDiff: 1209598.99658394 nFacets: 4 nrow dataFiltered(): 496 input timeRange: 1209600 | timeMin: 2023-11-30 16:03:55.417 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209598.99699998 nFacets: 4 nrow dataFiltered(): 496 input timeRange: 1209600 | timeMin: 2023-11-30 17:03:56.546912 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209597.86708832 nFacets: 4 nrow dataFiltered(): 496 input timeRange: 1209600 | timeMin: 2023-11-30 16:03:56.547 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209597.8670001 nFacets: 4 nrow dataFiltered(): 496 input timeRange: 1209600 | timeMin: 2023-11-30 17:03:58.016479 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209596.3975215 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 16:03:58.016 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209596.398 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 17:03:59.272871 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209595.14112926 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 16:03:59.273 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209595.14100003 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 17:04:00.740711 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209593.67328858 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 16:04:00.741 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209593.6730001 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 17:04:02.182793 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209592.23120689 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 16:04:02.183 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209592.23099995 nFacets: 4 nrow dataFiltered(): 176 Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 1209600 | timeMin: 2023-11-30 17:04:03.635933 | timeMax: 2023-12-14 16:03:54.414 | timeDiff: 1209590.77806664 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 08:37:28.536206 | timeMax: 2023-12-15 08:37:28.536801 | timeDiff: 1814400.00059462 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-24 07:37:28.536 | timeMax: 2023-12-15 07:37:28.537 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 432 Warning: Removed 12 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 117 p33712/Proteomics/QEXACTIVE_1/analytic_20231214/20231214_C33712_007_autoQC03dda.raw autoQC01 module APEX wide nrow: 255079 autoQC01 module APEX long nrow: 324 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). p33712/Proteomics/QEXACTIVE_1/analytic_20231212/20231212_C33712_001_autoQC01.raw p33712/Proteomics/QEXACTIVE_1/analytic_20231214/20231214_C33712_001_autoQC01.raw NA p33712/Proteomics/QEXACTIVE_1/analytic_20231214/20231214_C33712_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 09:07:29.916547 | timeMax: 2023-12-15 09:07:29.917136 | timeDiff: 1814400.00058961 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-24 08:07:29.917 | timeMax: 2023-12-15 08:07:29.917 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 NA nFacets: 1 nrow dataFiltered(): 468 nFacets: 1 nrow dataFiltered(): 180 nrow dataFiltered(): 180 nrow dataFiltered(): 180 nrow dataFiltered(): 180 nrow dataFiltered(): 180 nrow dataFiltered(): 180 nrow dataFiltered(): 180 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 09:54:39.266754 | timeMax: 2023-12-15 09:54:39.267349 | timeDiff: 1814400.00059581 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-24 08:54:39.267 | timeMax: 2023-12-15 08:54:39.267 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA nFacets: 4 nrow dataFiltered(): 1184 nrow dataFiltered(): 1184 nrow dataFiltered(): 1184 nrow dataFiltered(): 1184 nrow dataFiltered(): 1184 nrow dataFiltered(): 1184 p23777/Proteomics/LUMOS_1/noheld_20231122/20231122_003_autoQC01_20231125073437.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-08 10:19:08.187916 | timeMax: 2023-12-15 10:19:08.18797 | timeDiff: 604800.000054359 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 10:19:15.962907 | timeMax: 2023-12-15 10:19:15.963601 | timeDiff: 1814400.00069356 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 09:19:15.96291 | timeMax: 2023-12-15 09:19:15.9636 | timeDiff: 1814400.00069022 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 09:19:15.963 | timeMax: 2023-12-15 09:19:15.964 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-10-19 09:19:17.685 | timeMax: 2023-12-15 09:19:15.964 | timeDiff: 4924798.27900004 nFacets: 1 nrow dataFiltered(): 325 nFacets: 1 nrow dataFiltered(): 126 nFacets: 4 nrow dataFiltered(): 1712 Warning: Removed 10 rows containing missing values (`geom_point()`). p33089/Proteomics/EXPLORIS_2/analytic_20231024/20231024_C33089_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-08 10:37:59.073066 | timeMax: 2023-12-15 10:37:59.073115 | timeDiff: 604800.000048876 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 11:44:28.41223 | timeMax: 2023-12-15 11:44:28.412823 | timeDiff: 1814400.00059271 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-24 10:44:28.412 | timeMax: 2023-12-15 10:44:28.413 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 11:51:20.343243 | timeMax: 2023-12-15 11:51:20.343829 | timeDiff: 1814400.00058579 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 10:51:20.34324 | timeMax: 2023-12-15 10:51:20.34383 | timeDiff: 1814400.00059009 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 10:51:20.343 | timeMax: 2023-12-15 10:51:20.344 | timeDiff: 1814400.00100017 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 180 p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_014_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_014_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_014_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 12:27:24.600849 | timeMax: 2023-12-15 12:27:24.601433 | timeDiff: 1814400.00058389 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 11:27:24.60085 | timeMax: 2023-12-15 11:27:24.60143 | timeDiff: 1814400.00057983 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 11:27:24.601 | timeMax: 2023-12-15 11:27:24.601 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-11-26 11:27:26.443 | timeMax: 2023-12-15 11:27:24.601 | timeDiff: 1641598.15799999 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 78 nrow dataFiltered(): 78 p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_037_autoQC03dda.raw nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 78 NA p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_037_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_037_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p24073/Proteomics/EXPLORIS_1/wilkin_20231122_20231122_Finland/20231122_037_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA input timeRange: 7776000 | timeMin: 2023-12-11 11:27:34.098 | timeMax: 2023-12-15 11:27:24.601 | timeDiff: 345590.503000021 nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 52 input timeRange: 7776000 | timeMin: 2023-12-12 11:28:26.567 | timeMax: 2023-12-15 11:27:24.601 | timeDiff: 259138.034000158 nFacets: 1 nrow dataFiltered(): 52 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 52 nrow dataFiltered(): 52 input timeRange: 7776000 | timeMin: 2023-12-14 11:28:33.918 | timeMax: 2023-12-15 11:27:24.601 | timeDiff: 86330.6830000877 nFacets: 1 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 13 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-06 11:28:42.65 | timeMax: 2023-12-15 11:27:24.601 | timeDiff: 777521.950999975 nFacets: 1 nrow dataFiltered(): 65 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 65 input timeRange: 7776000 | timeMin: 2023-11-27 11:28:53.396 | timeMax: 2023-12-15 11:27:24.601 | timeDiff: 1555111.20500016 nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 14:09:08.89135 | timeMax: 2023-12-15 14:09:08.892068 | timeDiff: 1814400.00071788 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-24 13:09:08.891 | timeMax: 2023-12-15 13:09:08.892 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 512 Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 208 p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33658/Proteomics/LUMOS_2/analytic_20231208/20231208_C33658_006_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning: Error in lm.wfit: 0 (non-NA) cases 176: stop 175: lm.wfit 174: lm 173: .fitChromatographicPeak 172: FUN 171: lapply 170: .fitPeak.rawrrChromatogram 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotProfiles 1: runApp NA NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231214_C3000_004_autoQC03dda1_autoQC4L.raw input timeRange: 7776000 | timeMin: 2023-09-22 13:09:17.75 | timeMax: 2023-12-15 13:09:08.892 | timeDiff: 7257591.14199996 nFacets: 1 nrow dataFiltered(): 858 nFacets: 1 nrow dataFiltered(): 216 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-08 14:38:11.365937 | timeMax: 2023-12-15 14:38:11.365992 | timeDiff: 604800.000055552 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 14:38:18.683818 | timeMax: 2023-12-15 14:38:18.684487 | timeDiff: 1814400.00066948 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-24 13:38:18.684 | timeMax: 2023-12-15 13:38:18.684 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 14:41:50.777455 | timeMax: 2023-12-15 14:41:50.778075 | timeDiff: 1814400.00062013 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 13:41:50.77745 | timeMax: 2023-12-15 13:41:50.77807 | timeDiff: 1814400.00062013 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 13:41:50.777 | timeMax: 2023-12-15 13:41:50.778 | timeDiff: 1814400.00100017 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 216 NA p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 14:56:51.587659 | timeMax: 2023-12-15 14:56:51.588256 | timeDiff: 1814400.00059628 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 13:56:51.588 | timeMax: 2023-12-15 13:56:51.588 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 216 NA NA p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 14:58:34.562098 | timeMax: 2023-12-15 14:58:34.563054 | timeDiff: 1814400.0009563 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 13:58:34.5621 | timeMax: 2023-12-15 13:58:34.56305 | timeDiff: 1814400.00094986 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 13:58:34.562 | timeMax: 2023-12-15 13:58:34.563 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 NA nFacets: 1 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 18 `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 208 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 260 nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 672 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 15:02:05.767225 | timeMax: 2023-12-15 15:02:05.768736 | timeDiff: 1814400.0015111 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 14:02:05.76722 | timeMax: 2023-12-15 14:02:05.76874 | timeDiff: 1814400.00151992 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 14:02:05.767 | timeMax: 2023-12-15 14:02:05.769 | timeDiff: 1814400.00200009 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 216 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 15:50:50.974845 | timeMax: 2023-12-15 15:50:50.975428 | timeDiff: 1814400.0005827 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 14:50:50.97485 | timeMax: 2023-12-15 14:50:50.97543 | timeDiff: 1814400.00057983 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 14:50:50.975 | timeMax: 2023-12-15 14:50:50.975 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 234 NA NA p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_003_autoQC03dia_2.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_003_autoQC03dia_2.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_003_autoQC03dia_2.raw Plotting chromatograms ... Read 22032 items plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp plotClick: NA p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw NA p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_002_autoQC03dia_1_20231215122111.raw Plotting chromatograms ... Read 22032 items p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_003_autoQC03dia_2.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_003_autoQC03dia_2.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_003_autoQC03dia_2.raw Plotting chromatograms ... Read 22032 items plotClick: p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_014_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_014_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p33731/Proteomics/FUSION_2/analytic_20231213/20231213_C33731_014_autoQC03dda.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 16:08:19.809193 | timeMax: 2023-12-15 16:08:19.810041 | timeDiff: 1814400.00084805 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 15:08:19.80919 | timeMax: 2023-12-15 15:08:19.81004 | timeDiff: 1814400.00084996 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 15:08:19.809 | timeMax: 2023-12-15 15:08:19.81 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 234 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 16:25:08.723566 | timeMax: 2023-12-15 16:25:08.724152 | timeDiff: 1814400.00058675 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-24 15:25:08.724 | timeMax: 2023-12-15 15:25:08.724 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 252 nrow dataFiltered(): 416 plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. NA p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_3.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_3.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_3.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 16:33:13.901941 | timeMax: 2023-12-15 16:33:13.902549 | timeDiff: 1814400.00060749 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-24 15:33:13.902 | timeMax: 2023-12-15 15:33:13.903 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 416 nFacets: 1 nrow dataFiltered(): 252 p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_3.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_3.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_3.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-24 16:39:56.425436 | timeMax: 2023-12-15 16:39:56.426051 | timeDiff: 1814400.00061512 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 nrow dataFiltered(): 104 input timeRange: 7776000 | timeMin: 2023-11-24 15:39:56.42544 | timeMax: 2023-12-15 15:39:56.42605 | timeDiff: 1814400.00061011 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 input timeRange: 7776000 | timeMin: 2023-11-24 15:39:56.425 | timeMax: 2023-12-15 15:39:56.426 | timeDiff: 1814400.00100017 nFacets: 1 nrow dataFiltered(): 104 nFacets: 1 nrow dataFiltered(): 126 nFacets: 4 nrow dataFiltered(): 640 Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA nFacets: 4 nrow dataFiltered(): 656 Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-26 13:42:18.49384 | timeMax: 2023-12-17 13:42:18.494419 | timeDiff: 1814400.0005784 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 672 input timeRange: 7776000 | timeMin: 2023-11-26 12:42:18.494 | timeMax: 2023-12-17 12:42:18.494 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 672 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 144 nrow dataFiltered(): 91 nFacets: 1 nrow dataFiltered(): 364 nFacets: 1 nrow dataFiltered(): 198 NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_4.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_4.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/FUSION_2/chiawei_20231215/20231215_004_autoQC03dia_4.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-26 17:53:23.757578 | timeMax: 2023-12-17 17:53:23.758178 | timeDiff: 1814400.00059938 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-26 16:53:23.758 | timeMax: 2023-12-17 16:53:23.758 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 672 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 108 nrow dataFiltered(): 78 nFacets: 1 nrow dataFiltered(): 364 nFacets: 1 nrow dataFiltered(): 198 NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Warning in observe() : timeDiff is higher than timeRange Warning in observe() : timeDiff is higher than timeRange nrow dataFiltered(): 364 nrow dataFiltered(): 198 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-27 07:56:36.803058 | timeMax: 2023-12-18 07:56:36.803645 | timeDiff: 1814400.00058699 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 640 input timeRange: 7776000 | timeMin: 2023-11-27 06:56:36.803 | timeMax: 2023-12-18 06:56:36.804 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 640 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 nrow dataFiltered(): 90 nrow dataFiltered(): 65