Listening on http://127.0.0.1:45159
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

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Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
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   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 08:00:33.826974 | timeMax: 2023-12-18 08:00:33.827553 | timeDiff: 1814400.00057936
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

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Warning: Error in if: argument is of length zero
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reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
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`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 234
nrow dataFiltered(): 858
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nrow dataFiltered(): 234
fn has changed to NA
fn has changed to NA
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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   1: runApp
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Warning: Error in if: argument is of length zero
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Warning: Error in if: argument is of length zero
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Warning: Error in if: argument is of length zero
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Warning: Error in if: argument is of length zero
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   1: runApp
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Warning: Error in if: argument is of length zero
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Warning: Error in if: argument is of length zero
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  83: renderFunc
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   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
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Warning: Error in if: argument is of length zero
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p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_012_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20231206/20231214_C3000_004_autoQC03dda1_autoQC4L.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231214_C3000_004_autoQC03dda1_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231214_C3000_004_autoQC03dda1_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
fn has changed to /srv/www/htdocs//p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
Reading raw file: /srv/www/htdocs//p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
Plotting chromatograms ...
Read 22032 items
p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
NA
p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
plotClick: 
p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw
plotClick: 
Read 22032 items
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw
NA
plotClick: 
Read 22032 items
Warning: Error in hist.default: 'x' must be numeric
  171: stop
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fn has changed to /srv/www/htdocs//NA
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
plotClick: 
Read 22032 items
Reading raw file: /srv/www/htdocs//p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20231206/20231214_C3000_004_autoQC03dda1_autoQC4L.raw
plotClick: 
Read 22032 items
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231214_C3000_004_autoQC03dda1_autoQC4L.raw
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20231206/20231214_C3000_004_autoQC03dda1_autoQC4L.raw
p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
plotClick: 
Read 22032 items
Reading raw file: /srv/www/htdocs//p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
Plotting chromatograms ...
fn has changed to /srv/www/htdocs//p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
plotClick: 
plotClick: 
plotClick: 
plotClick: 
p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
plotClick: 
plotClick: 
plotClick: 
plotClick: 
plotClick: 
plotClick: 
plotClick: 
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
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   1: runApp
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`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 4
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reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
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input timeRange: 2592000 | timeMin: 2023-11-27 08:02:24.842 | timeMax: 2023-12-18 08:02:36.917 | timeDiff: 1814412.07500005
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p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
NA
fn has changed to NA
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fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 09:06:37.727312 | timeMax: 2023-12-18 09:06:37.728161 | timeDiff: 1814400.00084901
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Warning: Error in if: argument is of length zero
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
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NA
fn has changed to NA
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fn has changed to NA
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 09:11:53.618534 | timeMax: 2023-12-18 09:11:53.619291 | timeDiff: 1814400.00075674
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Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
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NA
fn has changed to NA
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fn has changed to NA
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Warning: Error in if: argument is of length zero
  97: renderUI
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  82: output$__autoQC01__-ui
   1: runApp
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Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
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NA
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NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
p33670/Proteomics/TIMSTOF_1/analytic_20231215/zip/20231215_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p33670/Proteomics/TIMSTOF_1/analytic_20231215/zip/20231215_001_autoQC03dia.d.zip
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
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Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 09:44:52.197947 | timeMax: 2023-12-18 09:44:52.198539 | timeDiff: 1814400.00059223
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
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fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 09:44:57.015183 | timeMax: 2023-12-18 09:44:57.015761 | timeDiff: 1814400.00057745
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
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nrow dataFiltered(): 640
input timeRange: 7776000 | timeMin: 2023-11-27 08:44:57.015 | timeMax: 2023-12-18 08:44:57.016 | timeDiff: 1814400.00099993
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NA
input timeRange: 7776000 | timeMin: 2023-11-01 08:44:58.267 | timeMax: 2023-12-18 08:44:57.016 | timeDiff: 4060798.74900007
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Warning: Removed 10 rows containing missing values (`geom_point()`).
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Warning: Removed 19 rows containing missing values (`geom_point()`).
Warning: Removed 6 rows containing missing values (`geom_line()`).
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Warning: Removed 7 rows containing missing values (`geom_point()`).
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reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
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NA
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`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nrow dataFiltered(): 156
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 10:36:58.809341 | timeMax: 2023-12-18 10:36:58.811788 | timeDiff: 1814400.00244737
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
input timeRange: 7776000 | timeMin: 2023-11-27 09:36:58.809 | timeMax: 2023-12-18 09:36:58.812 | timeDiff: 1814400.00300002
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