Listening on http://127.0.0.1:38443
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 14:45:04.948414 | timeMax: 2023-12-18 14:45:04.949797 | timeDiff: 1814400.0013833
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-27 13:45:04.94841 | timeMax: 2023-12-18 13:45:04.9498 | timeDiff: 1814400.00139022
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 672
input timeRange: 7776000 | timeMin: 2023-11-27 13:45:04.948 | timeMax: 2023-12-18 13:45:04.95 | timeDiff: 1814400.00200009
nFacets: 4
nrow dataFiltered(): 672
vals$rawDiag: TRUE
NA
p3000/Proteomics/EXPLORIS_2/analytic_20231218/20231218_004_autoQC01.raw
p3000/Proteomics/EXPLORIS_2/analytic_20231218/20231218_002_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231218/20231218_002_autoQC01.raw
plotChargeState
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawDiag-autoQC03-plot
    1: runApp
reading index for 20231218_002_autoQC01.raw...
NA
p3000/Proteomics/EXPLORIS_2/analytic_20231218/20231218_004_autoQC01.raw
plotLockMassCorrection
plotInjectionTime
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
NA
vals$rawrr: TRUE
plotChargeState
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231218/20231218_002_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
plotPrecursorHeatmap
plotScanTime
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 90
nrow dataFiltered(): 65
vals$rawDiag: TRUE
vals$rawDiag: TRUE
p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_027_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_027_autoQC03dia.raw
plotChargeState
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-rawDiag-autoQC03-plot
    1: runApp
reading index for 20231213_C33732_027_autoQC03dia.raw...
vals$rawrr: TRUE
NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw
p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw
plotChargeState
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw
Plotting chromatograms ...
Read 22032 items
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-rawDiag-autoQC03-plot
    1: runApp
reading index for 20231204_005_autoQC4L_K562.raw...
NA
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotChargeState
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
NA
plotMassDistribution
plotCycleTime
plotLockMassCorrection
plotMassDistribution
plotPrecursorHeatmap
plotMzDistribution
plotTicBasepeak
plotScanTime
plotMassDistribution
plotLockMassCorrection
plotInjectionTime
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
vals$rawrr: TRUE
plotChargeState
Reading raw file: /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_027_autoQC03dia.raw
Plotting chromatograms ...
Read 22032 items
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'


Execution halted
Warning messages:
1: agg could not write to the given file 
2: agg could not write to the given file 
3: agg could not write to the given file