Listening on http://127.0.0.1:37877 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-12 11:16:14.42323 | timeMax: 2023-12-19 11:16:14.423625 | timeDiff: 604800.000394821 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-28 11:16:30.797476 | timeMax: 2023-12-19 11:16:30.79836 | timeDiff: 1814400.00088429 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-28 11:16:35.682251 | timeMax: 2023-12-19 11:16:35.683216 | timeDiff: 1814400.0009644 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-28 10:16:35.68225 | timeMax: 2023-12-19 10:16:35.68322 | timeDiff: 1814400.00096989 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-28 10:16:35.682 | timeMax: 2023-12-19 10:16:35.683 | timeDiff: 1814400.00100017 nFacets: 1 nFacets: 1 nrow dataFiltered(): 90 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... NA nFacets: 2 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_37_autoQC03dda_autoQC4L.raw p3000/Proteomics/LUMOS_1/pgehrig_20231211_autoQC/20231211_37_autoQC03dda_autoQC4L.raw p33686/Proteomics/LUMOS_1/analytic_20231218/20231218_C33686_007_autoQC03dda.raw vals$rawDiag: TRUE NA p33686/Proteomics/LUMOS_1/analytic_20231218/20231218_C33686_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33686/Proteomics/LUMOS_1/analytic_20231218/20231218_C33686_007_autoQC03dda.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20231218_C33686_007_autoQC03dda.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. NA plotCycleTime plotPrecursorHeatmap plotTicBasepeak plotClick: fn has changed to /srv/www/htdocs//p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw plotChargeState reading index for 20231127_034_autoQC4L.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. plotTicBasepeak nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... plotChargeState plotTicBasepeak NA p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw NA nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 672 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20231218/20231218_002_autoQC01.raw nrow dataFiltered(): 672 using 'ggh4x' package ... Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. nrow dataFiltered(): 672 using 'ggh4x' package ... Execution halted Warning message: agg could not write to the given file