Listening on http://127.0.0.1:41991 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-28 14:23:09.581139 | timeMax: 2023-12-19 14:23:09.58203 | timeDiff: 1814400.00089025 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 90 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-28 13:23:09.58114 | timeMax: 2023-12-19 13:23:09.58203 | timeDiff: 1814400.00089025 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-28 13:23:09.581 | timeMax: 2023-12-19 13:23:09.582 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 221 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-10-24 13:23:16.069 | timeMax: 2023-11-14 13:23:16.07 | timeDiff: 1814400.00099993 nFacets: 2 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p25391/Proteomics/LUMOS_1/mengt_20231025_HTRA1_TAILS/20231025_006_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p25391/Proteomics/LUMOS_1/mengt_20231025_HTRA1_TAILS/20231025_006_autoQC4L.raw plotClick: p25391/Proteomics/LUMOS_1/mengt_20231025_HTRA1_TAILS/20231025_006_autoQC4L.raw plotClick: plotClick: NA p25391/Proteomics/LUMOS_1/mengt_20231025_HTRA1_TAILS/20231025_006_autoQC4L.raw p25391/Proteomics/LUMOS_1/mengt_20231025_HTRA1_TAILS/20231025_006_autoQC4L.raw plotClick: plotClick: NA input timeRange: 7776000 | timeMin: 2023-10-01 13:23:58.244 | timeMax: 2023-11-14 13:23:16.07 | timeDiff: 3801557.82599998 nFacets: 4 nrow dataFiltered(): 988 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 plotClick: fn has changed to /srv/www/htdocs//NA nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-10-01 13:23:58.244 | timeMax: 2023-12-19 13:25:41.95675 | timeDiff: 6825703.71274996 nFacets: 1 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-10-01 13:23:58.244 | timeMax: 2023-12-19 13:25:41.957 | timeDiff: 6825703.71300006 nFacets: 1 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p3000/Proteomics/TIMSTOF_1/spfammatter_20231120/zip/20231120_006_autoQC03_diaPASEF.d.zip plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/TIMSTOF_1/spfammatter_20231120/zip/20231120_006_autoQC03_diaPASEF.d.zip NA p33383/Proteomics/TIMSTOF_1/spfammatter_20231128_/zip/20231128_002_autoQC03diaPASEF.d.zip NA nrow dataFiltered(): 252 using 'ggh4x' package ... Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 2544 using 'ggh4x' package ... Warning: Removed 21 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-28 15:27:40.676488 | timeMax: 2023-12-19 15:27:40.678223 | timeDiff: 1814400.00173545 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 nFacets: 0 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 0 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-28 14:27:40.67649 | timeMax: 2023-12-19 14:27:40.67822 | timeDiff: 1814400.00172997 nFacets: 0 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-28 14:27:40.676 | timeMax: 2023-12-19 14:27:40.678 | timeDiff: 1814400.00199986 nrow dataFiltered(): 216 using 'ggh4x' package ... 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