Listening on http://127.0.0.1:42699 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 09:25:13.891813 | timeMax: 2023-12-20 09:25:13.893102 | timeDiff: 1814400.00128937 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 90 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-29 08:25:13.89181 | timeMax: 2023-12-20 08:25:13.8931 | timeDiff: 1814400.00129008 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-29 08:25:13.892 | timeMax: 2023-12-20 08:25:13.893 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip nFacets: 3 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip NA p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 09:32:44.431487 | timeMax: 2023-12-20 09:32:44.432872 | timeDiff: 1814400.0013845 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-29 08:32:44.43149 | timeMax: 2023-12-20 08:32:44.43287 | timeDiff: 1814400.00138021 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-29 08:32:44.431 | timeMax: 2023-12-20 08:32:44.433 | timeDiff: 1814400.00200009 nFacets: 1 nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 10:57:10.715002 | timeMax: 2023-12-20 10:57:10.72212 | timeDiff: 1814400.0071187 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-29 09:57:10.715 | timeMax: 2023-12-20 09:57:10.722 | timeDiff: 1814400.00699997 nFacets: 4 nrow dataFiltered(): 720 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 11:29:06.624771 | timeMax: 2023-12-20 11:29:06.626976 | timeDiff: 1814400.00220466 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-29 10:29:06.62477 | timeMax: 2023-12-20 10:29:06.62698 | timeDiff: 1814400.00221014 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-29 10:29:06.625 | timeMax: 2023-12-20 10:29:06.627 | timeDiff: 1814400.00200009 nFacets: 1 nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 12:02:12.685323 | timeMax: 2023-12-20 12:02:12.687243 | timeDiff: 1814400.00191998 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-29 11:02:12.68532 | timeMax: 2023-12-20 11:02:12.68724 | timeDiff: 1814400.00191975 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-29 11:02:12.685 | timeMax: 2023-12-20 11:02:12.687 | timeDiff: 1814400.00200009 nFacets: 1 nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 12:23:25.968584 | timeMax: 2023-12-20 12:23:25.97042 | timeDiff: 1814400.00183558 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-29 11:23:25.969 | timeMax: 2023-12-20 11:23:25.97 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... NA nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nFacets: 0 nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p33807/Proteomics/QEXACTIVE_1/analytic_20231219/20231219_C33807_005_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 247 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-08 08:25:19.084 | timeMax: 2023-12-20 08:25:13.893 | timeDiff: 3628794.80899978 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 14:24:51.869094 | timeMax: 2023-12-20 14:24:51.878583 | timeDiff: 1814400.00948882 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-29 13:24:51.869 | timeMax: 2023-12-20 13:24:51.879 | timeDiff: 1814400.00999999 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 736 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 180 using 'ggh4x' package ... nFacets: 3 nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 221 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw NA p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw NA p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p3000/Proteomics/LUMOS_2/analytics_20231206/20231206_C3000_002_autoQC03dda1_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 16:24:58.97075 | timeMax: 2023-12-20 16:24:58.971424 | timeDiff: 1814400.00067377 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-29 15:24:58.97075 | timeMax: 2023-12-20 15:24:58.97142 | timeDiff: 1814400.00066972 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-29 15:24:58.971 | timeMax: 2023-12-20 15:24:58.971 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 16:25:26.00398 | timeMax: 2023-12-20 16:25:26.005134 | timeDiff: 1814400.00115371 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-29 15:25:26.004 | timeMax: 2023-12-20 15:25:26.005 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 16:33:39.217306 | timeMax: 2023-12-20 16:33:39.2191 | timeDiff: 1814400.00179482 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-29 15:33:39.217 | timeMax: 2023-12-20 15:33:39.219 | timeDiff: 1814400.00200009 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ...