Listening on http://127.0.0.1:34997 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 315360000 | timeMin: 2023-11-29 17:27:20.25995 | timeMax: 2023-12-20 17:27:20.261449 | timeDiff: 1814400.00149941 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 315360000 | timeMin: 2023-11-29 16:27:20.26 | timeMax: 2023-12-20 16:27:20.261 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 544 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 52 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. input timeRange: 315360000 | timeMin: 2014-09-05 16:30:04.678 | timeMax: 2023-12-20 16:27:20.261 | timeDiff: 293155035.583 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 1235 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA /scratch/cpanse/autoQC4L/TIMSTOF_1/Bruker_nanoElute/20220216_008_autoQC4L_1335/autoQC4L.comet.txt plotClick: fn has changed to /srv/www/htdocs///scratch/cpanse/autoQC4L/TIMSTOF_1/Bruker_nanoElute/20220216_008_autoQC4L_1335/autoQC4L.comet.txt NA /scratch/cpanse/autoQC4L/TIMSTOF_1/20210720_001_autoQC4L/autoQC4L.comet.txt /scratch/cpanse/autoQC4L/TIMSTOF_1/20210720_001_autoQC4L/autoQC4L.comet.txt /scratch/cpanse/autoQC4L/TIMSTOF_1/20220202_001_autoQC4L_ReproSil_25cm_Slot2-54_1_2978/autoQC4L.comet.txt NA /scratch/cpanse/autoQC4L/TIMSTOF_1/20220202_004_autoQC4L_ReproSil_25cm_Slot2-54_1_2981/autoQC4L.comet.txt fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 315360000 | timeMin: 2023-11-29 17:41:07.073593 | timeMax: 2023-12-20 17:41:07.074644 | timeDiff: 1814400.00105071 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 315360000 | timeMin: 2023-11-29 16:41:07.07359 | timeMax: 2023-12-20 16:41:07.07464 | timeDiff: 1814400.00104976 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... input timeRange: 315360000 | timeMin: 2023-11-29 16:41:07.074 | timeMax: 2023-12-20 16:41:07.075 | timeDiff: 1814400.00100017 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... p32853/Proteomics/TIMSTOF_1/analytic_20231207/zip/20231207_001_autoQC03dda.d.zip p33563/Proteomics/TIMSTOF_1/alleblond_20231208_/zip/20231208_006_autoQC03dia.d.zip NA NA nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231206/zip/20231106_002_autoQC03dda_25ng.d.zip NA p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231206/zip/20231106_002_autoQC03dda_25ng.d.zip nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). NA input timeRange: 315360000 | timeMin: 2016-03-22 16:41:54.618 | timeMax: 2023-12-20 16:41:07.075 | timeDiff: 244425552.457 nFacets: 4 nrow dataFiltered(): 28256 using 'ggh4x' package ... Warning: Removed 231 rows containing missing values (`geom_point()`). p25473/Proteomics/EXPLORIS_1/antdit_20211011/20211004_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p25473/Proteomics/EXPLORIS_1/antdit_20211011/20211004_001_autoQC01.raw vals$rawDiag: TRUE plotChargeState reading index for 20211004_001_autoQC01.raw... p3594/Proteomics/EXPLORIS_1/stefania_20210920/20210920_071a_autoQC01.raw nFacets: 1 nrow dataFiltered(): 4992 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... NA vals$rawDiag: TRUE p22760/Proteomics/EXPLORIS_1/antdit_20201001_o22760/20201001_023_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p22760/Proteomics/EXPLORIS_1/antdit_20201001_o22760/20201001_023_autoQC4L.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20201001_023_autoQC4L.raw... NA p22760/Proteomics/EXPLORIS_1/antdit_20201001_o22760/20201001_023_autoQC4L.raw NA p3000/Proteomics/EXPLORIS_1/roschi_20220616_DPVnew/20220616_004_autoQC4L_DPV.raw NA plotCycleTime p27310/Proteomics/EXPLORIS_1/lkunz_20220217_test_sp3_digest/20220217_028_autoQC4L.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 17:44:42.999369 | timeMax: 2023-12-20 17:44:42.999951 | timeDiff: 1814400.00058126 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-29 16:44:42.99937 | timeMax: 2023-12-20 16:44:42.99995 | timeDiff: 1814400.00057983 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-29 16:44:42.999 | timeMax: 2023-12-20 16:44:43 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... vals$rawDiag: TRUE p33599/Proteomics/EXPLORIS_2/analytic_20231212/20231212_C33599_019_autoQC03dda.raw NA p33599/Proteomics/EXPLORIS_2/analytic_20231212/20231212_C33599_019_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33599/Proteomics/EXPLORIS_2/analytic_20231212/20231212_C33599_019_autoQC03dda.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20231212_C33599_019_autoQC03dda.raw... plotMassDistribution vals$rawrr: TRUE NA p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA vals$rawDiag: TRUE plotChargeState reading index for 20231211_004_autoQC03dia.raw... plotLockMassCorrection p33552/Proteomics/EXPLORIS_2/analytic_20231130/20231130_C33552_021_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p33552/Proteomics/EXPLORIS_2/analytic_20231130/20231130_C33552_021_autoQC4L.raw plotChargeState reading index for 20231130_C33552_021_autoQC4L.raw... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-29 22:22:16.809489 | timeMax: 2023-12-20 22:22:16.8102 | timeDiff: 1814400.00071073 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-29 21:22:16.809 | timeMax: 2023-12-20 21:22:16.81 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 01:19:45.958536 | timeMax: 2023-12-21 01:19:45.959105 | timeDiff: 1814400.00056934 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 00:19:45.959 | timeMax: 2023-12-21 00:19:45.959 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 01:22:19.250358 | timeMax: 2023-12-21 01:22:19.250932 | timeDiff: 1814400.00057316 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 00:22:19.25 | timeMax: 2023-12-21 00:22:19.251 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20231110_Nicotinic_Acid/20231219_18_autoQC01.raw NA nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 09:51:08.443797 | timeMax: 2023-12-21 09:51:08.444374 | timeDiff: 1814400.00057626 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 768 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 08:51:08.444 | timeMax: 2023-12-21 08:51:08.444 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 09:56:17.778325 | timeMax: 2023-12-21 09:56:17.778902 | timeDiff: 1814400.00057626 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 08:56:17.77833 | timeMax: 2023-12-21 08:56:17.7789 | timeDiff: 1814400.00056982 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 08:56:17.778 | timeMax: 2023-12-21 08:56:17.779 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 221 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 10:15:12.484809 | timeMax: 2023-12-21 10:15:12.485486 | timeDiff: 1814400.00067639 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-30 09:15:12.485 | timeMax: 2023-12-21 09:15:12.485 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 10:18:01.240237 | timeMax: 2023-12-21 10:18:01.240808 | timeDiff: 1814400.00057054 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 768 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 09:18:01.24 | timeMax: 2023-12-21 09:18:01.241 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 13:40:12.90397 | timeMax: 2023-12-21 13:40:12.904536 | timeDiff: 1814400.00056601 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 12:40:12.90397 | timeMax: 2023-12-21 12:40:12.90454 | timeDiff: 1814400.00057006 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 12:40:12.904 | timeMax: 2023-12-21 12:40:12.905 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 15:05:27.923364 | timeMax: 2023-12-21 15:05:27.924252 | timeDiff: 1814400.00088835 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 14:05:27.92336 | timeMax: 2023-12-21 14:05:27.92425 | timeDiff: 1814400.00088978 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 14:05:27.923 | timeMax: 2023-12-21 14:05:27.924 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 16:14:11.954043 | timeMax: 2023-12-21 16:14:11.954615 | timeDiff: 1814400.00057149 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:14:11.95404 | timeMax: 2023-12-21 15:14:11.95461 | timeDiff: 1814400.00057006 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:14:11.954 | timeMax: 2023-12-21 15:14:11.955 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 18:22:12.678583 | timeMax: 2023-12-21 18:22:12.679291 | timeDiff: 1814400.00070763 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 768 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 17:22:12.679 | timeMax: 2023-12-21 17:22:12.679 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 19:56:56.172028 | timeMax: 2023-12-21 19:56:56.172612 | timeDiff: 1814400.00058413 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-30 18:56:56.17203 | timeMax: 2023-12-21 18:56:56.17261 | timeDiff: 1814400.00058007 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-30 18:56:56.172 | timeMax: 2023-12-21 18:56:56.173 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 816 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw vals$rawDiag: TRUE plotChargeState reading index for 20231221_012_autoQC01.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-01 06:20:59.756225 | timeMax: 2023-12-22 06:20:59.756806 | timeDiff: 1814400.00058126 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-01 05:20:59.756 | timeMax: 2023-12-22 05:20:59.757 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-01 08:23:50.037436 | timeMax: 2023-12-22 08:23:50.038025 | timeDiff: 1814400.00058889 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-01 07:23:50.037 | timeMax: 2023-12-22 07:23:50.038 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... NA p33599/Proteomics/EXPLORIS_2/analytic_20231212/20231212_C33599_019_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20231218/20231218_005_autoQC4L_K562.raw p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_021_autoQC03dia.raw NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_021_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-01 09:08:48.655918 | timeMax: 2023-12-22 09:08:48.656493 | timeDiff: 1814400.00057435 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-01 08:08:48.656 | timeMax: 2023-12-22 08:08:48.656 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-01 12:12:57.050528 | timeMax: 2023-12-22 12:12:57.051237 | timeDiff: 1814400.00070906 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-01 11:12:57.05053 | timeMax: 2023-12-22 11:12:57.05124 | timeDiff: 1814400.00071001 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-01 11:12:57.051 | timeMax: 2023-12-22 11:12:57.051 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 52 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... NA p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231219/zip/20231219_003_autoQC03dda_25ng_stdPASEF.d.zip input timeRange: 7776000 | timeMin: 2023-11-25 11:12:59.84 | timeMax: 2023-12-22 11:12:57.051 | timeDiff: 2332797.2110002 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 52 using 'ggh4x' package ... NA nrow dataFiltered(): 52 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231206/zip/20231106_002_autoQC03dda_25ng.d.zip p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231206/zip/20231106_001a_autoQC03dda_25ng.d.zip p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231219/zip/20231219_003_autoQC03dda_25ng_stdPASEF.d.zip p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231219/zip/20231219_002_autoQC03dda_25ng_stdPASEF.d.zip NA nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... p3189/Proteomics/EXPLORIS_1/kbende_20231219/20231219_023_autoQC03dda.raw NA p3189/Proteomics/EXPLORIS_1/kbende_20231220/20231220_013_autoQC03dda.raw NA nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-15 11:13:21.685 | timeMax: 2023-12-22 11:12:57.051 | timeDiff: 3196775.36600018 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-02 13:51:48.104044 | timeMax: 2023-12-23 13:51:48.104618 | timeDiff: 1814400.00057387 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-02 12:51:48.104 | timeMax: 2023-12-23 12:51:48.105 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 256146 autoQC01 module APEX long nrow: 588 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 6 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 784 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-02 13:56:51.885687 | timeMax: 2023-12-23 13:56:51.886261 | timeDiff: 1814400.00057435 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-02 12:56:51.886 | timeMax: 2023-12-23 12:56:51.886 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-02 16:46:12.337592 | timeMax: 2023-12-23 16:46:12.338191 | timeDiff: 1814400.00059843 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-02 15:46:12.33759 | timeMax: 2023-12-23 15:46:12.33819 | timeDiff: 1814400.00059986 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-02 15:46:12.338 | timeMax: 2023-12-23 15:46:12.338 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-03 17:08:59.612906 | timeMax: 2023-12-24 17:08:59.613585 | timeDiff: 1814400.00067878 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-03 16:08:59.613 | timeMax: 2023-12-24 16:08:59.614 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-04 09:31:14.545937 | timeMax: 2023-12-25 09:31:14.546526 | timeDiff: 1814400.00058937 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-04 08:31:14.546 | timeMax: 2023-12-25 08:31:14.547 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-04 09:32:12.694092 | timeMax: 2023-12-25 09:32:12.6947 | timeDiff: 1814400.00060749 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-04 08:32:12.694 | timeMax: 2023-12-25 08:32:12.695 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 448 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw plotClick: vals$rawrr: TRUE nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). Reading raw file: /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA vals$rawrr: FALSE vals$rawDiag: TRUE plotChargeState reading index for 20231220_005_autoQC01.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. vals$rawrr: TRUE vals$rawDiag: FALSE nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_036_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20231110_Nicotinic_Acid/20231219_10_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20231110_Nicotinic_Acid/20231219_10_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20231110_Nicotinic_Acid/20231219_18_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20231110_Nicotinic_Acid/20231219_18_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20231110_Nicotinic_Acid/20231219_18_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20231110_Nicotinic_Acid/20231219_18_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_029_autoQC01.raw NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_007_autoQC01_a.raw NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_047_autoQC01.raw NA p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_047_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_047_autoQC01.raw Reading raw file: /srv/www/htdocs//p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_047_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_012_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_064_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_064_autoQC01.raw Reading raw file: /srv/www/htdocs//p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_064_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_007_autoQC01.raw p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p33780/Proteomics/LUMOS_1/vismi_20231220/20231221_007_autoQC01.raw Plotting chromatograms ... Read 22032 items nFacets: 3 nrow dataFiltered(): 480 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nrow dataFiltered(): 480 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 2 nrow dataFiltered(): 320 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 160 using 'ggh4x' package ... NA p30165/Proteomics/LUMOS_1/eichenberger_20231205/20231205_036_autoQC01.raw nFacets: 2 nrow dataFiltered(): 320 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 3 nrow dataFiltered(): 480 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA vals$rawDiag: TRUE reading index for 20231221_007_autoQC01.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. vals$rawDiag: FALSE reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-04 09:48:14.616371 | timeMax: 2023-12-25 09:48:14.616965 | timeDiff: 1814400.0005939 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 720 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-04 08:48:14.616 | timeMax: 2023-12-25 08:48:14.617 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 720 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-06 09:14:24.706725 | timeMax: 2023-12-27 09:14:24.707299 | timeDiff: 1814400.00057364 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 640 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-06 08:14:24.707 | timeMax: 2023-12-27 08:14:24.707 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 640 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-10-19 08:14:47.922 | timeMax: 2023-12-27 08:14:24.707 | timeDiff: 5961576.78500009 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... vals$rawDiag: TRUE p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_021_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_021_autoQC03dia.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawDiag-autoQC03-plot 1: runApp reading index for 20231220_C33652_021_autoQC03dia.raw... NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-20 09:57:51.24688 | timeMax: 2023-12-27 09:57:51.246923 | timeDiff: 604800.000043154 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-06 13:16:27.381482 | timeMax: 2023-12-27 13:16:27.382069 | timeDiff: 1814400.00058722 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 640 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-06 12:16:27.381 | timeMax: 2023-12-27 12:16:27.382 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 640 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-07 07:10:39.515134 | timeMax: 2023-12-28 07:10:39.515707 | timeDiff: 1814400.00057292 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 624 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-07 06:10:39.515 | timeMax: 2023-12-28 06:10:39.516 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-07 07:19:11.246284 | timeMax: 2023-12-28 07:19:11.24686 | timeDiff: 1814400.00057578 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 624 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-07 06:19:11.246 | timeMax: 2023-12-28 06:19:11.247 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-12 11:15:10.070083 | timeMax: 2024-01-02 11:15:10.070656 | timeDiff: 1814400.00057268 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-12 10:15:10.07 | timeMax: 2024-01-02 10:15:10.071 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-12 11:16:53.513132 | timeMax: 2024-01-02 11:16:53.513711 | timeDiff: 1814400.00057888 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-12 10:16:53.513 | timeMax: 2024-01-02 10:16:53.514 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 09:01:18.350658 | timeMax: 2024-01-03 09:01:18.351246 | timeDiff: 1814400.00058842 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 400 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 08:01:18.351 | timeMax: 2024-01-03 08:01:18.351 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 400 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 NA autoQC01 module APEX wide nrow: 256146 autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 162 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2023-11-29 08:01:36.145 | timeMax: 2024-01-03 08:01:18.351 | timeDiff: 3023982.20600009 nFacets: 1 nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_053_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//NA NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 10:08:07.858381 | timeMax: 2024-01-03 10:08:07.858967 | timeDiff: 1814400.00058532 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 400 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 09:08:07.858 | timeMax: 2024-01-03 09:08:07.859 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 400 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 10:40:37.423223 | timeMax: 2024-01-03 10:40:37.42381 | timeDiff: 1814400.0005877 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-13 09:40:37.423 | timeMax: 2024-01-03 09:40:37.424 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 384 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 10:41:04.328596 | timeMax: 2024-01-03 10:41:04.329311 | timeDiff: 1814400.00071502 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 384 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 09:41:04.329 | timeMax: 2024-01-03 09:41:04.329 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 384 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 10:42:40.15033 | timeMax: 2024-01-03 10:42:40.151011 | timeDiff: 1814400.00068092 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 384 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 09:42:40.15 | timeMax: 2024-01-03 09:42:40.151 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 384 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 10:51:44.326211 | timeMax: 2024-01-03 10:51:44.326793 | timeDiff: 1814400.00058198 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 384 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 09:51:44.326 | timeMax: 2024-01-03 09:51:44.327 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 384 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 10:52:59.512035 | timeMax: 2024-01-03 10:52:59.512615 | timeDiff: 1814400.00057983 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 384 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 09:52:59.512 | timeMax: 2024-01-03 09:52:59.513 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 384 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 240 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 12:38:49.701341 | timeMax: 2024-01-03 12:38:49.701956 | timeDiff: 1814400.00061488 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 384 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 11:38:49.701 | timeMax: 2024-01-03 11:38:49.702 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 384 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 256146 autoQC01 module APEX long nrow: 288 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 autoQC01 module APEX long nrow: 180 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 240 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange input timeRange: 7776000 | timeMin: 2023-12-27 11:38:50.63 | timeMax: 2024-01-03 11:38:49.702 | timeDiff: 604799.071999788 nFacets: 4 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 13:33:22.935568 | timeMax: 2024-01-03 13:33:22.93617 | timeDiff: 1814400.00060153 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-13 12:33:22.93557 | timeMax: 2024-01-03 12:33:22.93617 | timeDiff: 1814400.00059986 autoQC01 module APEX wide nrow: 256157 autoQC01 module APEX long nrow: 288 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 192 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 6 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-13 12:33:22.936 | timeMax: 2024-01-03 12:33:22.936 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2023-12-27 15:28:53.540944 | timeMax: 2024-01-03 15:28:53.540993 | timeDiff: 604800.000049353 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 15:28:59.925086 | timeMax: 2024-01-03 15:28:59.925662 | timeDiff: 1814400.00057626 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 384 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 14:28:59.925 | timeMax: 2024-01-03 14:28:59.926 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 384 using 'ggh4x' package ... NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-05 14:29:15.331 | timeMax: 2024-01-03 14:28:59.926 | timeDiff: 2505584.59500003 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 15:43:50.210995 | timeMax: 2024-01-03 15:43:50.211603 | timeDiff: 1814400.00060821 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 368 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 14:43:50.211 | timeMax: 2024-01-03 14:43:50.212 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 368 using 'ggh4x' package ... NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 368 using 'ggh4x' package ... nrow dataFiltered(): 368 using 'ggh4x' package ... nrow dataFiltered(): 368 using 'ggh4x' package ... NA nrow dataFiltered(): 368 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 72 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2023-11-23 14:48:54.518 | timeMax: 2024-01-03 14:43:50.212 | timeDiff: 3542095.69400001 nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 299 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 2592000 | timeMin: 2023-12-13 15:55:03.72841 | timeMax: 2024-01-03 15:55:03.74352 | timeDiff: 1814400.01510954 nFacets: 4 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 2592000 | timeMin: 2023-12-13 14:55:03.728 | timeMax: 2024-01-03 14:55:03.744 | timeDiff: 1814400.01600003 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 224 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_004_autoQC01.raw NA p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_001_autoQC01.raw plotClick: NA plotClick: fn has changed to /srv/www/htdocs//p33665/Proteomics/FUSION_2/aeberle_20231219/20231219_004_autoQC01_20231221122628.raw p33665/Proteomics/FUSION_2/aeberle_20231219/20231219_004_autoQC01_20231221122628.raw plotClick: p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_004_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_004_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_004_autoQC01.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 16:09:06.826793 | timeMax: 2024-01-03 16:09:06.827381 | timeDiff: 1814400.00058818 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 368 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 15:09:06.827 | timeMax: 2024-01-03 15:09:06.827 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 368 using 'ggh4x' package ... NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2023-11-21 15:09:20.382 | timeMax: 2024-01-03 15:09:06.827 | timeDiff: 3715186.44499993 nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_053_autoQC03dia.d.zip input timeRange: 7776000 | timeMin: 2023-10-19 15:09:36.768 | timeMax: 2024-01-03 15:09:06.827 | timeDiff: 6566370.05900002 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 0 plotClick: fn has changed to /srv/www/htdocs//NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 16:25:09.745454 | timeMax: 2024-01-03 16:25:09.746046 | timeDiff: 1814400.00059175 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-13 15:25:09.74545 | timeMax: 2024-01-03 15:25:09.74605 | timeDiff: 1814400.0006001 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 15:25:09.745 | timeMax: 2024-01-03 15:25:09.746 | timeDiff: 1814400.00100017 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 16:27:14.995895 | timeMax: 2024-01-03 16:27:14.996486 | timeDiff: 1814400.00059056 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-13 15:27:14.9959 | timeMax: 2024-01-03 15:27:14.99649 | timeDiff: 1814400.00059009 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 15:27:14.996 | timeMax: 2024-01-03 15:27:14.996 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 17:04:28.276271 | timeMax: 2024-01-03 17:04:28.276866 | timeDiff: 1814400.00059533 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 368 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 16:04:28.276 | timeMax: 2024-01-03 16:04:28.277 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 368 using 'ggh4x' package ... NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw nrow dataFiltered(): 368 using 'ggh4x' package ... nrow dataFiltered(): 368 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-13 18:45:07.355091 | timeMax: 2024-01-03 18:45:07.35568 | timeDiff: 1814400.00058889 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 368 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-13 17:45:07.355 | timeMax: 2024-01-03 17:45:07.356 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 368 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 256245 autoQC01 module APEX long nrow: 276 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-12-30 17:45:08.995 | timeMax: 2024-01-03 17:45:07.356 | timeDiff: 345598.361000061 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-12-13 17:45:30.745 | timeMax: 2024-01-03 17:45:07.356 | timeDiff: 1814376.61100006 nFacets: 4 nrow dataFiltered(): 368 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 4 nrow dataFiltered(): 544 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 78 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 256311 autoQC01 module APEX long nrow: 180 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 08:51:31.551355 | timeMax: 2024-01-04 08:51:31.551934 | timeDiff: 1814400.00057888 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 320 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 07:51:31.551 | timeMax: 2024-01-04 07:51:31.552 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 320 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 400 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p33761/Proteomics/LUMOS_2/analytic_20231221/20231220_C33761_010_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2023-12-26 07:51:32.421 | timeMax: 2024-01-04 07:51:31.552 | timeDiff: 777599.131000042 nFacets: 4 nrow dataFiltered(): 48 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-16 07:52:04.324 | timeMax: 2024-01-04 07:51:31.552 | timeDiff: 1641567.22800016 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_005_autoQC01.raw NA p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_005_autoQC01.raw vals$rawrr: TRUE vals$rawrr: FALSE nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 91 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw NA p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw NA p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw NA p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw plotClick: NA p33761/Proteomics/LUMOS_2/analytic_20231220/20231220_C33761_007_autoQC03dda.raw plotClick: NA p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_012_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_012_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 08:58:20.108525 | timeMax: 2024-01-04 08:58:20.109117 | timeDiff: 1814400.00059223 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 320 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 07:58:20.109 | timeMax: 2024-01-04 07:58:20.109 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 320 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 08:58:28.556187 | timeMax: 2024-01-04 08:58:28.556765 | timeDiff: 1814400.00057793 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 320 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 07:58:28.556 | timeMax: 2024-01-04 07:58:28.557 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 320 using 'ggh4x' package ... NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 09:18:29.340489 | timeMax: 2024-01-04 09:18:29.341087 | timeDiff: 1814400.00059772 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 08:18:29.34 | timeMax: 2024-01-04 08:18:29.341 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 528 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p33795/Proteomics/EXPLORIS_1/analytic_20240103/20240103_C33795_012_autoQC01.raw nFacets: 4 nrow dataFiltered(): 240 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p33652/Proteomics/QEXACTIVE_1/analytic_20231220/20231220_C33652_005_autoQC01.raw NA nFacets: 4 nrow dataFiltered(): 400 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_005_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_005_autoQC01.raw p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_005_autoQC01.raw nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 09:20:04.868863 | timeMax: 2024-01-04 09:20:04.869437 | timeDiff: 1814400.00057459 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 08:20:04.869 | timeMax: 2024-01-04 08:20:04.869 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 320 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 09:30:58.279668 | timeMax: 2024-01-04 09:30:58.280265 | timeDiff: 1814400.00059628 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-14 08:30:58.27967 | timeMax: 2024-01-04 08:30:58.28026 | timeDiff: 1814400.00059009 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 08:30:58.28 | timeMax: 2024-01-04 08:30:58.28 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 09:39:12.06748 | timeMax: 2024-01-04 09:39:12.068112 | timeDiff: 1814400.00063252 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 09:39:15.189398 | timeMax: 2024-01-04 09:39:15.19 | timeDiff: 1814400.00060201 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... NA NA input timeRange: 7776000 | timeMin: 2023-12-01 08:40:32.891 | timeMax: 2024-01-03 09:08:07.859 | timeDiff: 2852854.96799994 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 09:40:46.807647 | timeMax: 2024-01-04 09:40:46.808239 | timeDiff: 1814400.00059247 nFacets: 4 input timeRange: 7776000 | timeMin: 2023-12-01 08:40:32.891 | timeMax: 2024-01-04 08:40:32.89105 | timeDiff: 2937600.00005007 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-01 08:40:32.891 | timeMax: 2024-01-04 08:40:32.891 | timeDiff: 2937600 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 09:51:19.455721 | timeMax: 2024-01-04 09:51:19.456291 | timeDiff: 1814400.00057054 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 08:51:19.456 | timeMax: 2024-01-04 08:51:19.456 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 528 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 240 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 10:04:18.558783 | timeMax: 2024-01-04 10:04:18.559374 | timeDiff: 1814400.0005908 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-14 09:04:18.55878 | timeMax: 2024-01-04 09:04:18.55937 | timeDiff: 1814400.00059009 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 09:04:18.559 | timeMax: 2024-01-04 09:04:18.559 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_003_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_003_autoQC03dda.raw p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_003_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 10:19:05.307929 | timeMax: 2024-01-04 10:19:05.308546 | timeDiff: 1814400.0006175 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 09:19:05.308 | timeMax: 2024-01-04 09:19:05.309 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 320 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 11:20:57.964703 | timeMax: 2024-01-04 11:20:57.965297 | timeDiff: 1814400.0005939 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-14 10:20:57.9647 | timeMax: 2024-01-04 10:20:57.9653 | timeDiff: 1814400.0006001 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 10:20:57.965 | timeMax: 2024-01-04 10:20:57.965 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 320 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 12:20:30.774329 | timeMax: 2024-01-04 12:20:30.774924 | timeDiff: 1814400.00059462 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 11:20:30.774 | timeMax: 2024-01-04 11:20:30.775 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_003_autoQC01.raw NA p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_003_autoQC01.raw NA p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_002_autoQC01.raw nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_003_autoQC03dda.raw NA p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw NA vals$rawDiag: TRUE plotChargeState reading index for 20240103_004_autoQC03dia.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. plotClick: p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_004_autoQC03dia.raw NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 13:53:31.646648 | timeMax: 2024-01-04 13:53:31.647229 | timeDiff: 1814400.00058126 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 12:53:31.647 | timeMax: 2024-01-04 12:53:31.647 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_002_autoQC01.raw nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 3 nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 400 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 14:23:53.518802 | timeMax: 2024-01-04 14:23:53.519779 | timeDiff: 1814400.00097656 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-14 13:23:53.519 | timeMax: 2024-01-04 13:23:53.52 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA NA p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_004_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_004_autoQC03dda.raw NA autoQC01 module APEX wide nrow: 256366 autoQC01 module APEX long nrow: 324 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 14:30:30.612418 | timeMax: 2024-01-04 14:30:30.613055 | timeDiff: 1814400.00063658 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 13:30:30.612 | timeMax: 2024-01-04 13:30:30.613 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange NA p33591/Proteomics/FUSION_2/hasanali_20231215/20231215_006_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-01-04 13:30:30.613 | timeMax: 2024-01-04 13:30:30.613 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-01-03 13:30:55.829 | timeMax: 2024-01-03 13:30:55.829 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-01-03 13:30:55.829 | timeMax: 2024-01-04 13:30:55.82911 | timeDiff: 86400.0001101494 nFacets: 4 nrow dataFiltered(): 144 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-01-03 13:30:55.829 | timeMax: 2024-01-04 13:30:55.829 | timeDiff: 86400 nFacets: 4 nrow dataFiltered(): 144 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-01-01 13:31:11.716 | timeMax: 2024-01-04 13:30:55.829 | timeDiff: 259184.112999916 nFacets: 4 nrow dataFiltered(): 176 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-31 13:31:23.853 | timeMax: 2024-01-04 13:30:55.829 | timeDiff: 345571.976000071 nFacets: 4 nrow dataFiltered(): 176 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p3000/Proteomics/FUSION_2/chiawei_20240103/20240103_004_autoQC01.raw NA vals$rawDiag: TRUE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 15:27:17.267541 | timeMax: 2024-01-04 15:27:17.268127 | timeDiff: 1814400.00058603 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 14:27:17.268 | timeMax: 2024-01-04 14:27:17.268 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 15:57:47.135267 | timeMax: 2024-01-04 15:57:47.135856 | timeDiff: 1814400.00058889 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 14:57:47.135 | timeMax: 2024-01-04 14:57:47.136 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 16:03:10.055046 | timeMax: 2024-01-04 16:03:10.055751 | timeDiff: 1814400.00070524 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-14 15:03:10.05505 | timeMax: 2024-01-04 15:03:10.05575 | timeDiff: 1814400.00069976 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 15:03:10.055 | timeMax: 2024-01-04 15:03:10.056 | timeDiff: 1814400.00099993 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 169 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 512 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 3 nrow dataFiltered(): 169 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 432 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). NA nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 16:57:33.852567 | timeMax: 2024-01-04 16:57:33.853159 | timeDiff: 1814400.00059152 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 15:57:33.853 | timeMax: 2024-01-04 15:57:33.853 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 16:57:39.043652 | timeMax: 2024-01-04 16:57:39.044244 | timeDiff: 1814400.00059175 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 15:57:39.044 | timeMax: 2024-01-04 15:57:39.044 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 512 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 240 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p33767/Proteomics/QEXACTIVE_1/analytic_20240104/20240104_C33767_004_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2023-11-22 15:57:40.18 | timeMax: 2024-01-04 15:57:39.044 | timeDiff: 3715198.86399984 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 195 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 17:04:25.828883 | timeMax: 2024-01-04 17:04:25.829469 | timeDiff: 1814400.00058627 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 16:04:25.829 | timeMax: 2024-01-04 16:04:25.829 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 208 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... vals$rawDiag: TRUE p33773/Proteomics/EXPLORIS_2/analytic_20231219/20231219_C33773_018_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33773/Proteomics/EXPLORIS_2/analytic_20231219/20231219_C33773_018_autoQC03dia.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawDiag-autoQC03-plot 1: runApp reading index for 20231219_C33773_018_autoQC03dia.raw... NA p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw vals$rawrr: TRUE vals$rawDiag: FALSE NA plotClick: fn has changed to /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_027_autoQC03dia.raw p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_027_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw NA nrow dataFiltered(): 65 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... reading index for 20231211_004_autoQC03dia.raw... vals$rawDiag: TRUE vals$rawDiag: FALSE plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/EXPLORIS_2/analytic_20231130/20231130_005_autoQC4L_K562.raw NA vals$rawDiag: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: FALSE vals$rawDiag: TRUE vals$rawDiag: FALSE vals$rawDiag: FALSE nFacets: 3 nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 17:26:41.891541 | timeMax: 2024-01-04 17:26:41.892278 | timeDiff: 1814400.00073624 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 16:26:41.892 | timeMax: 2024-01-04 16:26:41.892 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... NA vals$rawrr: TRUE plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_004_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_004_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_004_autoQC03dia.raw Plotting chromatograms ... Read 22032 items plotClick: p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_004_autoQC03dia.raw NA vals$rawrr: FALSE vals$rawDiag: TRUE plotChargeState reading index for 20240104_004_autoQC03dia.raw... plotClick: p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_004_autoQC03dia.raw NA plotCycleTime plotPrecursorHeatmap plotTicBasepeak NA input timeRange: 7776000 | timeMin: 2023-12-07 16:27:12.842 | timeMax: 2024-01-04 16:26:41.892 | timeDiff: 2419169.04999995 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... plotChargeState fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 17:47:03.139652 | timeMax: 2024-01-04 17:47:03.140309 | timeDiff: 1814400.0006566 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-12-14 16:47:03.13965 | timeMax: 2024-01-04 16:47:03.14031 | timeDiff: 1814400.00066018 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 16:47:03.14 | timeMax: 2024-01-04 16:47:03.14 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 195 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_004_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-14 18:28:02.969839 | timeMax: 2024-01-04 18:28:02.970468 | timeDiff: 1814400.00062871 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-14 17:28:02.97 | timeMax: 2024-01-04 17:28:02.97 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 08:52:00.54521 | timeMax: 2024-01-05 08:52:00.545804 | timeDiff: 1814400.00059342 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 07:52:00.545 | timeMax: 2024-01-05 07:52:00.546 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 08:52:32.998087 | timeMax: 2024-01-05 08:52:32.998794 | timeDiff: 1814400.00070691 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 07:52:32.998 | timeMax: 2024-01-05 07:52:32.999 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 08:53:04.634407 | timeMax: 2024-01-05 08:53:04.635021 | timeDiff: 1814400.00061393 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 07:53:04.634 | timeMax: 2024-01-05 07:53:04.635 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 08:53:17.565862 | timeMax: 2024-01-05 08:53:17.566461 | timeDiff: 1814400.00059962 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 07:53:17.566 | timeMax: 2024-01-05 07:53:17.566 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 7 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-04 07:53:34.935 | timeMax: 2023-12-25 07:53:34.935 | timeDiff: 1814400 nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-04 07:53:34.935 | timeMax: 2024-01-05 07:53:34.93506 | timeDiff: 2764800.00006008 nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-04 07:53:34.935 | timeMax: 2023-12-30 07:53:40.05 | timeDiff: 2246405.11500001 nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 09:00:51.542006 | timeMax: 2024-01-05 09:00:51.542585 | timeDiff: 1814400.00057912 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 7 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-12-15 08:00:51.542 | timeMax: 2024-01-05 08:00:51.543 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 7 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_038_autoQC01.raw p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_038_autoQC01.raw NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA NA nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... vals$rawrr: TRUE p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 224 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 09:17:31.587541 | timeMax: 2024-01-05 09:17:31.588122 | timeDiff: 1814400.00058079 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 08:17:31.588 | timeMax: 2024-01-05 08:17:31.588 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_008_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_008_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_006_autoQC03dia.raw p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_006_autoQC03dia.raw plotClick: plotClick: plotClick: p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_007_autoQC03dia.raw NA p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_008_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_008_autoQC03dia.raw plotClick: p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_007_autoQC03dia.raw NA NA nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... p33665/Proteomics/FUSION_2/aeberle_20231219/20231219_005_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 09:32:28.906475 | timeMax: 2024-01-05 09:32:28.907064 | timeDiff: 1814400.00058985 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 08:32:28.906 | timeMax: 2024-01-05 08:32:28.907 | timeDiff: 1814400.00100017 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange vals$rawrr: TRUE NA vals$rawDiag: TRUE vals$rawDiag: FALSE vals$rawDiag: TRUE vals$rawrr: FALSE nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_001a_autoQC01.raw NA vals$rawDiag: FALSE nrow dataFiltered(): 352 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_004_autoQC01.raw p33801/Proteomics/FUSION_2/wuethrich_20231221/20231221_001_autoQC01.raw NA p3000/Proteomics/FUSION_2/chiawei_20240103/20240103_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240103/20240103_003_autoQC01.raw p3000/Proteomics/FUSION_2/chiawei_20240104/20240104_004_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-01-03 08:32:29.744 | timeMax: 2024-01-05 08:32:28.907 | timeDiff: 172799.163000107 nFacets: 4 nrow dataFiltered(): 224 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 224 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nrow dataFiltered(): 224 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 09:37:18.88516 | timeMax: 2024-01-05 09:37:18.885918 | timeDiff: 1814400.00075793 nFacets: 4 nFacets: 3 nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 10:07:12.180827 | timeMax: 2024-01-05 10:07:12.181424 | timeDiff: 1814400.00059652 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 09:07:12.181 | timeMax: 2024-01-05 09:07:12.181 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 256520 autoQC01 module APEX long nrow: 228 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-10-16 09:07:40.788 | timeMax: 2024-01-05 09:07:12.181 | timeDiff: 6998371.39299989 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2023-10-16 09:07:40.788 | timeMax: 2024-01-05 10:09:00.250008 | timeDiff: 6998479.46200776 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2023-10-16 09:07:40.788 | timeMax: 2024-01-05 09:09:00.25 | timeDiff: 6998479.46199989 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2023-07-13 09:09:01.851 | timeMax: 2024-01-05 09:09:00.25 | timeDiff: 15206398.3989999 nFacets: 1 nrow dataFiltered(): 806 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 4816 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values (`geom_point()`). nFacets: 1 nrow dataFiltered(): 650 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 923 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 3824 using 'ggh4x' package ... Warning: Removed 146 rows containing missing values (`geom_point()`). Warning: Removed 35 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 10:38:23.887472 | timeMax: 2024-01-05 10:38:23.888175 | timeDiff: 1814400.00070214 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 09:38:23.887 | timeMax: 2024-01-05 09:38:23.888 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 11:34:41.43092 | timeMax: 2024-01-05 11:34:41.43151 | timeDiff: 1814400.00059032 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 10:34:41.431 | timeMax: 2024-01-05 10:34:41.432 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_013_autoQC01.raw NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA NA p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_005_autoQC03dia.raw p33212/Proteomics/LUMOS_2/cfortes_20240103/20240103_003_autoQC03dda.raw p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_004_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 11:52:30.883511 | timeMax: 2024-01-05 11:52:30.884095 | timeDiff: 1814400.00058389 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 304 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 10:52:30.884 | timeMax: 2024-01-05 10:52:30.884 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 304 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 13:06:31.777849 | timeMax: 2024-01-05 13:06:31.778446 | timeDiff: 1814400.000597 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 12:06:31.778 | timeMax: 2024-01-05 12:06:31.778 | timeDiff: 1814400 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). plotClick: fn has changed to /srv/www/htdocs//NA plotClick: nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-06 12:06:32.984 | timeMax: 2024-01-05 12:06:31.778 | timeDiff: 2591998.79400015 nFacets: 4 nrow dataFiltered(): 592 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-14 12:18:45.426 | timeMax: 2024-01-05 12:06:31.778 | timeDiff: 1900066.352 nFacets: 4 nrow dataFiltered(): 320 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nrow dataFiltered(): 320 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 256542 autoQC01 module APEX long nrow: 240 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 320 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-16 12:18:50.333 | timeMax: 2024-01-05 12:06:31.778 | timeDiff: 1727261.44500017 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 2592000 | timeMin: 2023-12-15 13:20:58.461735 | timeMax: 2024-01-05 13:20:58.468132 | timeDiff: 1814400.00639677 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 2592000 | timeMin: 2023-12-15 12:20:58.462 | timeMax: 2024-01-05 12:20:58.468 | timeDiff: 1814400.00600004 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange input timeRange: 7776000 | timeMin: 2023-12-15 12:20:58.462 | timeMax: 2024-01-05 13:21:11.900397 | timeDiff: 1814413.43839693 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-15 12:20:58.462 | timeMax: 2024-01-05 12:21:11.9 | timeDiff: 1814413.4380002 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA vals$rawrr: TRUE vals$rawrr: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA plotClick: