Listening on http://127.0.0.1:44301
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
fn has changed to NA
fn has changed to NA
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fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-15 13:56:01.033708 | timeMax: 2024-01-05 13:56:01.034301 | timeDiff: 1814400.00059271
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-12-15 12:56:01.03371 | timeMax: 2024-01-05 12:56:01.0343 | timeDiff: 1814400.00059009
nFacets: 3
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 54
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
nrow dataFiltered(): 169
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
input timeRange: 7776000 | timeMin: 2023-12-15 12:56:01.034 | timeMax: 2024-01-05 12:56:01.034 | timeDiff: 1814400
nFacets: 3
nrow dataFiltered(): 169
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 416
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
autoQC01 module APEX wide nrow: 256542
autoQC01 module APEX long nrow: 312
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-15 14:44:27.224386 | timeMax: 2024-01-05 14:44:27.224955 | timeDiff: 1814400.00056958
nFacets: 4
nFacets: 3
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 54
using 'ggh4x' package ...
nrow dataFiltered(): 169
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
input timeRange: 7776000 | timeMin: 2023-12-15 13:44:27.22439 | timeMax: 2024-01-05 13:44:27.22496 | timeDiff: 1814400.00057006
nFacets: 3
nrow dataFiltered(): 169
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-15 13:44:27.224 | timeMax: 2024-01-05 13:44:27.225 | timeDiff: 1814400.00099993
nFacets: 3
nrow dataFiltered(): 169
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
NA
p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
NA
p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
NA
NA
input timeRange: 7776000 | timeMin: 2023-11-29 13:44:30.953 | timeMax: 2024-01-05 13:44:27.225 | timeDiff: 3196796.27199984
nFacets: 3
nrow dataFiltered(): 325
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 126
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-07 13:46:16.245 | timeMax: 2024-01-05 13:44:27.225 | timeDiff: 2505490.98000002
nFacets: 3
nrow dataFiltered(): 221
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 108
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-16 13:46:16.245 | timeMax: 2024-01-05 13:44:27.225 | timeDiff: 1727890.98000002
nFacets: 3
nrow dataFiltered(): 169
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-08 13:46:22.855 | timeMax: 2024-01-05 13:44:27.225 | timeDiff: 2419084.36999989
nFacets: 3
nrow dataFiltered(): 195
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 72
using 'ggh4x' package ...
p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw
NA
p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
plotClick: 
NA
p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
NA
autoQC01 module APEX wide nrow: 256542
autoQC01 module APEX long nrow: 396
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).