Listening on http://127.0.0.1:46423
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-15 15:03:19.455156 | timeMax: 2024-01-05 15:03:19.455743 | timeDiff: 1814400.00058627
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 288
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-15 14:03:19.455 | timeMax: 2024-01-05 14:03:19.456 | timeDiff: 1814400.00100017
nFacets: 4
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-15 14:03:19.455 | timeMax: 2024-01-05 15:03:36.493242 | timeDiff: 1814417.03824234
nFacets: 4
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-12-15 14:03:19.455 | timeMax: 2024-01-05 14:03:36.493 | timeDiff: 1814417.03800011
nFacets: 4
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 31536000 | timeMin: 2023-02-11 14:03:38.455 | timeMax: 2024-01-05 14:03:36.493 | timeDiff: 28339198.0380001
nFacets: 4
nrow dataFiltered(): 8400
using 'ggh4x' package ...
Warning: Removed 45 rows containing missing values (`geom_point()`).
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 1521
using 'ggh4x' package ...
NA
nFacets: 1
nrow dataFiltered(): 1768
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 31536000 | timeMin: 2023-09-30 14:04:14.776 | timeMax: 2024-01-05 14:03:36.493 | timeDiff: 8380761.71700001
nFacets: 1
nrow dataFiltered(): 546
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
nFacets: 4
nrow dataFiltered(): 2304
using 'ggh4x' package ...
Warning: Removed 53 rows containing missing values (`geom_point()`).
input timeRange: 31536000 | timeMin: 2023-01-26 14:05:10.67 | timeMax: 2024-01-05 14:03:36.493 | timeDiff: 29721505.823
nFacets: 4
nrow dataFiltered(): 7872
using 'ggh4x' package ...
Warning: Removed 317 rows containing missing values (`geom_point()`).
p31182/Proteomics/QEXACTIVE_1/analytic_20230321/20230321_C31182_021_autoQC01.raw
NA
nrow dataFiltered(): 7872
using 'ggh4x' package ...
Warning: Removed 634 rows containing missing values (`geom_point()`).
p30837/Proteomics/QEXACTIVE_1/analytic_20230213/20230213_C30837_001a_autoQC01.raw
vals$rawDiag: TRUE
nrow dataFiltered(): 7872
using 'ggh4x' package ...
Warning: Removed 317 rows containing missing values (`geom_point()`).
NA
p31694/Proteomics/QEXACTIVE_1/analytic_20230511/20230511_C31694_010_autoQC01.raw
p31701/Proteomics/QEXACTIVE_1/analytic_20230510/20230510_C31701_001_autoQC01.raw
NA
p31535/Proteomics/QEXACTIVE_1/analytic_20230427/20230427_C31535_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p31535/Proteomics/QEXACTIVE_1/analytic_20230427/20230427_C31535_001_autoQC01.raw
plotChargeState
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawDiag-autoQC03-plot
    1: runApp
reading index for 20230427_C31535_001_autoQC01.raw...
NA
plotInjectionTime
plotMzDistribution
plotLockMassCorrection
nFacets: 1
nrow dataFiltered(): 1859
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0


Execution halted
Warning message:
agg could not write to the given file