Listening on http://127.0.0.1:32953 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-15 15:35:00.688026 | timeMax: 2024-01-05 15:35:00.688617 | timeDiff: 1814400.00059104 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-15 14:35:00.68803 | timeMax: 2024-01-05 14:35:00.68862 | timeDiff: 1814400.00059009 nFacets: 4 nrow dataFiltered(): 288 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-15 14:35:00.688 | timeMax: 2024-01-05 14:35:00.689 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 288 using 'ggh4x' package ... NA p33727/Proteomics/EXPLORIS_2/analytic_20231215/20231215_C33727_007_autoQC01.raw NA p33751/Proteomics/EXPLORIS_2/analytic_20231215/20231215_C33751_001_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2023-10-14 14:35:39.38 | timeMax: 2024-01-05 14:35:00.689 | timeDiff: 7171161.30899978 nFacets: 4 nrow dataFiltered(): 2112 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... NA p29272/Proteomics/EXPLORIS_2/analytic_20220905_test_samples/20220905_C29272_007_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_005_autoQC4L_K562.raw NA nFacets: 3 nrow dataFiltered(): 741 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_088_autoQC4L.raw p3000/Proteomics/LUMOS_2/analytic_20220104_autoQC/20220105_C3000_003_autoQC4L.raw NA p33355/Proteomics/LUMOS_2/analytic_20231116/20231116_C33355_013_autoQC4L.raw NA nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2023-10-14 14:35:39.38 | timeMax: 2024-01-05 15:41:16.677882 | timeDiff: 7171537.29788208 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2023-10-14 14:35:39.38 | timeMax: 2024-01-05 14:41:16.678 | timeDiff: 7171537.29799986 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2023-02-13 14:41:17.908 | timeMax: 2024-01-05 14:41:16.678 | timeDiff: 28166398.77 nFacets: 1 nrow dataFiltered(): 1755 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231206_C33626_011_autoQC03dda.raw input timeRange: 31536000 | timeMin: 2023-09-12 14:41:21.404 | timeMax: 2024-01-05 14:41:16.678 | timeDiff: 9935995.27399993 nFacets: 1 nrow dataFiltered(): 663 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2023-10-08 14:41:32.675 | timeMax: 2024-01-05 14:41:16.678 | timeDiff: 7689584.00300002 nFacets: 1 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA input timeRange: 31536000 | timeMin: 2023-03-19 14:41:41.532 | timeMax: 2023-06-16 14:41:25.535 | timeDiff: 7689584.00300002 nFacets: 1 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p31924/Proteomics/QEXACTIVE_1/analytic_20230606/20230606_C31924_005_autoQC4L.raw input timeRange: 31536000 | timeMin: 2023-10-08 14:42:08.188 | timeMax: 2024-01-05 14:41:52.19133 | timeDiff: 7689584.00333023 nFacets: 1 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 31536000 | timeMin: 2023-10-08 14:42:08.188 | timeMax: 2024-01-05 14:41:52.191 | timeDiff: 7689584.00300002 nFacets: 1 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA nFacets: 4 nrow dataFiltered(): 2048 using 'ggh4x' package ... Warning: Removed 45 rows containing missing values (`geom_point()`). NA input timeRange: 31536000 | timeMin: 2023-01-11 14:42:19.052 | timeMax: 2024-01-05 14:41:52.191 | timeDiff: 31017573.1389999 nFacets: 4 nrow dataFiltered(): 8128 using 'ggh4x' package ... Warning: Removed 318 rows containing missing values (`geom_point()`). p32507/Proteomics/QEXACTIVE_1/analytic_20230804/20230804_C32507_001_autoQC01.raw p32226/Proteomics/QEXACTIVE_1/analytic_20230807/20230807_C32226_038_autoQC01.raw p31970/Proteomics/QEXACTIVE_1/analytic_20230614/20230614_C31970_001_autoQC01.raw NA nrow dataFiltered(): 8128 using 'ggh4x' package ... Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. Warning: Removed 318 rows containing missing values (`geom_point()`). p31501/Proteomics/QEXACTIVE_1/analytic_20230418/20230418_C31501_001_autoQC01.raw NA p31677/Proteomics/QEXACTIVE_1/analytic_20230531/20230531_C31677_004_autoQC01.raw NA nFacets: 1 nrow dataFiltered(): 1924 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 1924 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 256564 autoQC01 module APEX long nrow: 6096 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 202 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 8128 using 'ggh4x' package ... Warning: Removed 318 rows containing missing values (`geom_point()`). vals$rawrr: TRUE p31535/Proteomics/QEXACTIVE_1/analytic_20230427/20230427_C31535_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p31535/Proteomics/QEXACTIVE_1/analytic_20230427/20230427_C31535_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p31535/Proteomics/QEXACTIVE_1/analytic_20230427/20230427_C31535_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA vals$rawDiag: TRUE plotChargeState reading index for 20230427_C31535_001_autoQC01.raw... p31942/Proteomics/QEXACTIVE_1/analytic_20230613/20230613_C31942_001_autoQC01.raw NA plotInjectionTime plotLockMassCorrection Execution halted