Listening on http://127.0.0.1:39621
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

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Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
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input timeRange: 7776000 | timeMin: 2023-12-18 16:18:35.166657 | timeMax: 2024-01-08 16:18:35.16725 | timeDiff: 1814400.00059247
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

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vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 128
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
input timeRange: 7776000 | timeMin: 2023-12-18 15:18:35.167 | timeMax: 2024-01-08 15:18:35.167 | timeDiff: 1814400
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using 'ggh4x' package ...
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
nrow dataFiltered(): 128
using 'ggh4x' package ...
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
input timeRange: 7776000 | timeMin: 2023-10-13 15:18:38.302 | timeMax: 2024-01-08 15:18:35.167 | timeDiff: 7516796.86500001
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using 'ggh4x' package ...
Warning: Removed 10 rows containing non-finite values (`stat_smooth()`).
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
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using 'ggh4x' package ...
Warning: Removed 9 rows containing non-finite values (`stat_smooth()`).
Warning: Removed 9 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
p33433/Proteomics/FUSION_2/wittmann_20231123/20231123_001_autoQC01.raw
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reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
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  problems(dat)
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using 'ggh4x' package ...
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using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nrow dataFiltered(): 468
using 'ggh4x' package ...
nrow dataFiltered(): 2002
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
NA
input timeRange: 7776000 | timeMin: 2023-12-14 15:20:29.067 | timeMax: 2024-01-08 15:18:35.167 | timeDiff: 2159886.10000014
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using 'ggh4x' package ...
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
Warning: Computation failed in `stat_smooth()`
Caused by error in `smooth.construct.cr.smooth.spec()`:
! x has insufficient unique values to support 10 knots: reduce k.
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using 'ggh4x' package ...
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using 'ggh4x' package ...
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using 'ggh4x' package ...
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using 'ggh4x' package ...
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using 'ggh4x' package ...
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
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   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 16:22:54.008142 | timeMax: 2024-01-08 16:22:54.008723 | timeDiff: 1814400.00058126
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vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 128
using 'ggh4x' package ...
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using 'ggh4x' package ...
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 16:28:36.959821 | timeMax: 2024-01-08 16:28:36.960429 | timeDiff: 1814400.00060868
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reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
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  problems(dat)
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vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
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using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
input timeRange: 7776000 | timeMin: 2023-12-18 15:28:36.95982 | timeMax: 2024-01-08 15:28:36.96043 | timeDiff: 1814400.00060987
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nrow dataFiltered(): 195
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-18 15:28:36.96 | timeMax: 2024-01-08 15:28:36.96 | timeDiff: 1814400
nFacets: 3
nrow dataFiltered(): 195
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
NA
p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_018_autoQC03dda.raw
plotClick: 
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p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw
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p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_004_autoQC03dda.raw
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p33212/Proteomics/LUMOS_2/cfortes_20240108/20240108_003_autoQC03dda.raw
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 16:36:20.587106 | timeMax: 2024-01-08 16:36:20.587685 | timeDiff: 1814400.00057912
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vals$rawDiag: FALSE
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using 'ggh4x' package ...
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nrow dataFiltered(): 128
using 'ggh4x' package ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 90
using 'ggh4x' package ...
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
nrow dataFiltered(): 90
using 'ggh4x' package ...
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
vals$rawDiag: TRUE
NA
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw
plotChargeState
Warning: Error in graphics::plot.new: figure margins too large
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  126: drawPlot
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   82: output$autoQC03-DDA-rawDiag-autoQC03-plot
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reading index for 20240104_003_autoQC03dda.raw...
plotCycleTime
plotTicBasepeak
vals$rawDiag: FALSE
vals$rawrr: TRUE
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw
Plotting chromatograms ...
Read 22032 items
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw
plotClick: 
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 16:40:35.034114 | timeMax: 2024-01-08 16:40:35.034729 | timeDiff: 1814400.00061488
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vals$rawrr: FALSE
vals$rawDiag: FALSE
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using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-18 15:40:35.034 | timeMax: 2024-01-08 15:40:35.035 | timeDiff: 1814400.00100017
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nrow dataFiltered(): 128
using 'ggh4x' package ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
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vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 90
using 'ggh4x' package ...
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using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
NA
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw
autoQC01 module APEX wide nrow: 256663
autoQC01 module APEX long nrow: 96
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 4 rows containing missing values (`geom_point()`).
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 16:40:58.929869 | timeMax: 2024-01-08 16:40:58.930452 | timeDiff: 1814400.00058293
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vals$rawrr: FALSE
vals$rawDiag: FALSE
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using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-18 15:40:58.93 | timeMax: 2024-01-08 15:40:58.93 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 352
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
NA
nFacets: 3
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 54
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240108/20240108_001_autoQC01.raw
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NA
NA
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw
plotClick: 
NA
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plotClick: 
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NA
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw
plotClick: 
NA
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
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   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 16:43:07.247424 | timeMax: 2024-01-08 16:43:07.248028 | timeDiff: 1814400.00060415
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vals$rawrr: FALSE
vals$rawDiag: FALSE
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using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
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using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
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using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
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using 'ggh4x' package ...
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using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
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using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
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nrow dataFiltered(): 96
using 'ggh4x' package ...
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using 'ggh4x' package ...
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using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
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using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
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NA
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using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
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  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
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   82: output$autoQC03-DDA-plot
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NA
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
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p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
NA
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
plotClick: 
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw
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p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_002_autoQC01.raw
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Warning: Error in if: argument is of length zero
  97: renderUI
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   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 17:43:00.287763 | timeMax: 2024-01-08 17:43:00.288383 | timeDiff: 1814400.00061989
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reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-12-18 16:43:00.28776 | timeMax: 2024-01-08 16:43:00.28838 | timeDiff: 1814400.00061989
fn has changed to NA
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Warning: Error in if: argument is of length zero
  97: renderUI
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   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-18 21:03:22.853375 | timeMax: 2024-01-08 21:03:22.853955 | timeDiff: 1814400.0005796
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 90
using 'ggh4x' package ...
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
input timeRange: 7776000 | timeMin: 2023-12-18 20:03:22.85338 | timeMax: 2024-01-08 20:03:22.85395 | timeDiff: 1814400.00057006
nFacets: 1
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-18 20:03:22.853 | timeMax: 2024-01-08 20:03:22.854 | timeDiff: 1814400.00100017
nFacets: 1
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 144
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 07:52:22.493901 | timeMax: 2024-01-09 07:52:22.494572 | timeDiff: 1814400.00067139
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-12-19 06:52:22.494 | timeMax: 2024-01-09 06:52:22.495 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 176
using 'ggh4x' package ...
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 08:49:49.729588 | timeMax: 2024-01-09 08:49:49.73016 | timeDiff: 1814400.0005722
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 384
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-19 07:49:49.73 | timeMax: 2024-01-09 07:49:49.73 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 384
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 08:49:59.672959 | timeMax: 2024-01-09 08:49:59.673538 | timeDiff: 1814400.00057864
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 176
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 07:49:59.673 | timeMax: 2024-01-09 07:49:59.674 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 176
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 08:50:27.663738 | timeMax: 2024-01-09 08:50:27.664313 | timeDiff: 1814400.00057483
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 176
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 07:50:27.664 | timeMax: 2024-01-09 07:50:27.664 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 176
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 08:50:32.543516 | timeMax: 2024-01-09 08:50:32.544089 | timeDiff: 1814400.00057292
nFacets: 4
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 320
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 07:50:32.544 | timeMax: 2024-01-09 07:50:32.544 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 320
using 'ggh4x' package ...
nrow dataFiltered(): 320
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-11-30 07:50:33.616 | timeMax: 2024-01-09 07:50:32.544 | timeDiff: 3455998.92799997
nFacets: 4
nrow dataFiltered(): 912
using 'ggh4x' package ...
Warning: Removed 19 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 848
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 08:53:57.777491 | timeMax: 2024-01-09 08:53:57.778082 | timeDiff: 1814400.00059104
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 176
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 07:53:57.777 | timeMax: 2024-01-09 07:53:57.778 | timeDiff: 1814400.00100017
nFacets: 4
nrow dataFiltered(): 176
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 08:57:37.263819 | timeMax: 2024-01-09 08:57:37.264917 | timeDiff: 1814400.00109839
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-12-19 07:57:37.26382 | timeMax: 2024-01-09 07:57:37.26492 | timeDiff: 1814400.00109982
nFacets: 4
nrow dataFiltered(): 176
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 07:57:37.264 | timeMax: 2024-01-09 07:57:37.265 | timeDiff: 1814400.00100017
nFacets: 4
nrow dataFiltered(): 176
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 0
nFacets: 4
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-12-08 07:58:20.081 | timeMax: 2024-01-09 07:57:37.265 | timeDiff: 2764757.18400002
nFacets: 4
nrow dataFiltered(): 0
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 09:33:31.331214 | timeMax: 2024-01-09 09:33:31.331783 | timeDiff: 1814400.00056911
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 08:33:31.331 | timeMax: 2024-01-09 08:33:31.332 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
nrow dataFiltered(): 192
using 'ggh4x' package ...
p32853/Proteomics/EXPLORIS_2/analytic_20231219/20231219_C32853_001_autoQC01.raw
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 90
using 'ggh4x' package ...
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
NA
nrow dataFiltered(): 54
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 3
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 4
NA
input timeRange: 7776000 | timeMin: 2023-11-24 08:34:05.799 | timeMax: 2024-01-09 08:33:31.332 | timeDiff: 3974365.53299999
nrow dataFiltered(): 144
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 572
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 572
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 108
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 130
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 09:37:21.977736 | timeMax: 2024-01-09 09:37:21.978313 | timeDiff: 1814400.00057697
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 08:37:21.978 | timeMax: 2024-01-09 08:37:21.978 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-12 08:37:23.023 | timeMax: 2024-01-09 08:37:21.978 | timeDiff: 2419198.95499992
nFacets: 4
nrow dataFiltered(): 512
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-11 08:37:31.007 | timeMax: 2024-01-09 08:37:21.978 | timeDiff: 2505590.97099996
nFacets: 4
nrow dataFiltered(): 544
using 'ggh4x' package ...
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 39
using 'ggh4x' package ...
NA
NA
vals$rawrr: TRUE
p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_009_autoQC03dia.raw
Plotting chromatograms ...
Read 22032 items
Plotting chromatograms ...
vals$rawrr: FALSE
vals$rawDiag: TRUE
plotChargeState
reading index for 20240104_009_autoQC03dia.raw...
p33773/Proteomics/EXPLORIS_2/analytic_20231219/20231219_C33773_018_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33773/Proteomics/EXPLORIS_2/analytic_20231219/20231219_C33773_018_autoQC03dia.raw
NA
reading index for 20231219_C33773_018_autoQC03dia.raw...
plotCycleTime
nFacets: 4
nrow dataFiltered(): 480
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 0
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
vals$rawDiag: FALSE
nFacets: 1
nrow dataFiltered(): 104
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
vals$rawDiag: TRUE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
plotChargeState
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE
vals$rawDiag: TRUE
vals$rawDiag: TRUE
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 4
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 72
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
p33640/Proteomics/LUMOS_1/kretschmer_20240105/20240105_005_autoQC03dda.raw
NA
nFacets: 4
nrow dataFiltered(): 480
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-02 08:37:34.633 | timeMax: 2024-01-09 08:37:21.978 | timeDiff: 3283187.34500003
nFacets: 4
nrow dataFiltered(): 784
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-12 08:47:08.093 | timeMax: 2024-01-09 08:37:21.978 | timeDiff: 5010613.88499999
nFacets: 4
nrow dataFiltered(): 1648
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
p33595/Proteomics/LUMOS_1/eichenberger_20231208/20231208_042_autoQC01.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 10:15:24.400903 | timeMax: 2024-01-09 10:15:24.401492 | timeDiff: 1814400.00058889
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 09:15:24.401 | timeMax: 2024-01-09 09:15:24.401 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 10:28:54.239171 | timeMax: 2024-01-09 10:28:54.239855 | timeDiff: 1814400.00068474
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 09:28:54.239 | timeMax: 2024-01-09 09:28:54.24 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-08 09:28:55.642 | timeMax: 2024-01-09 09:28:54.24 | timeDiff: 2764798.59800005
nFacets: 4
nrow dataFiltered(): 688
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-11-26 09:28:59.563 | timeMax: 2024-01-09 09:28:54.24 | timeDiff: 3801594.67700005
nFacets: 4
nrow dataFiltered(): 912
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
input timeRange: 7776000 | timeMin: 2023-11-19 09:28:59.563 | timeMax: 2024-01-09 09:28:54.24 | timeDiff: 4406394.67700005
nFacets: 4
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-16 09:29:04.35 | timeMax: 2024-01-09 09:28:54.24 | timeDiff: 4665589.8900001
nFacets: 4
nrow dataFiltered(): 1232
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-12 09:29:08.855 | timeMax: 2024-01-09 09:28:54.24 | timeDiff: 5011185.38499999
nFacets: 4
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
input timeRange: 7776000 | timeMin: 2023-10-22 09:29:11.705 | timeMax: 2024-01-09 09:28:54.24 | timeDiff: 6825582.53500009
nFacets: 4
nrow dataFiltered(): 2000
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 312
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 108
using 'ggh4x' package ...
nFacets: 3
nrow dataFiltered(): 715
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 442
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
NA
p33865/Proteomics/QEXACTIVE_1/analytic_20240104/20240104_C33865_009_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33865/Proteomics/QEXACTIVE_1/analytic_20240104/20240104_C33865_009_autoQC03dda.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
vals$rawrr: TRUE
vals$rawrr: FALSE
vals$rawDiag: TRUE
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
p33577/Proteomics/QEXACTIVE_1/analytic_20231201/20231201_C33577_005_autoQC03dda.raw
vals$rawDiag: FALSE
vals$rawrr: TRUE
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
NA
plotClick: 
fn has changed to /srv/www/htdocs//p33528/Proteomics/QEXACTIVE_1/analytic_20231128/20231128_C33528_005_autoQC4L.raw
p33528/Proteomics/QEXACTIVE_1/analytic_20231128/20231128_C33528_005_autoQC4L.raw
Reading raw file: /srv/www/htdocs//p33528/Proteomics/QEXACTIVE_1/analytic_20231128/20231128_C33528_005_autoQC4L.raw
Plotting chromatograms ...
Read 22032 items
Plotting chromatograms ...
p33865/Proteomics/QEXACTIVE_1/analytic_20240104/20240104_C33865_009_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33865/Proteomics/QEXACTIVE_1/analytic_20240104/20240104_C33865_009_autoQC03dda.raw
Read 22032 items
Reading raw file: /srv/www/htdocs//p33865/Proteomics/QEXACTIVE_1/analytic_20240104/20240104_C33865_009_autoQC03dda.raw
Plotting chromatograms ...
Plotting chromatograms ...
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 11:11:50.60521 | timeMax: 2024-01-09 11:11:50.605799 | timeDiff: 1814400.00058866
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 10:11:50.605 | timeMax: 2024-01-09 10:11:50.606 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 11:57:14.73462 | timeMax: 2024-01-09 11:57:14.735291 | timeDiff: 1814400.00067115
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 10:57:14.735 | timeMax: 2024-01-09 10:57:14.735 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 384
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
autoQC01 module APEX wide nrow: 256740
autoQC01 module APEX long nrow: 288
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 14 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 264
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
input timeRange: 15552000 | timeMin: 2023-12-19 10:57:14.735 | timeMax: 2024-01-09 11:58:47.292677 | timeDiff: 1814492.55767727
autoQC01 module APEX long nrow: 264
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 264
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 352
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 352
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, DGLDAASYYAPVR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
autoQC01 module APEX long nrow: 440
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, GTFIIDPGGVIR, DGLDAASYYAPVR
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 352
using 'ggh4x' package ...
Warning: Removed 1 rows containing non-finite values (`stat_smooth()`).
Warning: Removed 1 rows containing missing values (`geom_point()`).
input timeRange: 15552000 | timeMin: 2023-12-19 10:57:14.735 | timeMax: 2024-01-09 10:58:47.293 | timeDiff: 1814492.55800009
nFacets: 4
nrow dataFiltered(): 352
using 'ggh4x' package ...
Warning: Removed 1 rows containing non-finite values (`stat_smooth()`).
Warning: Removed 1 rows containing missing values (`geom_point()`).
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 12:04:46.036534 | timeMax: 2024-01-09 12:04:46.037105 | timeDiff: 1814400.00057101
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 11:04:46.037 | timeMax: 2024-01-09 11:04:46.037 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
nrow dataFiltered(): 192
using 'ggh4x' package ...
NA
p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw
vals$rawrr: TRUE
nrow dataFiltered(): 192
using 'ggh4x' package ...
Reading raw file: /srv/www/htdocs//p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
p33773/Proteomics/EXPLORIS_2/analytic_20231219/20231219_C33773_011_autoQC01.raw
p33639/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33639_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33639/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33639_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p33639/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33639_001_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
NA
Plotting chromatograms ...
Plotting chromatograms ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 12:24:09.75299 | timeMax: 2024-01-09 12:24:09.753634 | timeDiff: 1814400.00064421
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-12-19 11:24:09.753 | timeMax: 2024-01-09 11:24:09.754 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 384
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 12:57:38.779005 | timeMax: 2024-01-09 12:57:38.779579 | timeDiff: 1814400.00057459
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 11:57:38.779 | timeMax: 2024-01-09 11:57:38.78 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 400
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
NA
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 260
using 'ggh4x' package ...
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 13:03:22.857774 | timeMax: 2024-01-09 13:03:22.858344 | timeDiff: 1814400.00056982
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 192
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 12:03:22.858 | timeMax: 2024-01-09 12:03:22.858 | timeDiff: 1814400
nFacets: 4
nrow dataFiltered(): 192
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 400
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 14:14:13.787966 | timeMax: 2024-01-09 14:14:13.788548 | timeDiff: 1814400.0005815
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 416
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-19 13:14:13.788 | timeMax: 2024-01-09 13:14:13.789 | timeDiff: 1814400.00099993
nFacets: 4
nrow dataFiltered(): 416
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 14:50:08.662889 | timeMax: 2024-01-09 14:50:08.663465 | timeDiff: 1814400.00057673
nFacets: 4
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 36
using 'ggh4x' package ...
nrow dataFiltered(): 26
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 13:50:08.66289 | timeMax: 2024-01-09 13:50:08.66347 | timeDiff: 1814400.00058007
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 36
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 13:50:08.663 | timeMax: 2024-01-09 13:50:08.663 | timeDiff: 1814400
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 36
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-05 13:50:11.674 | timeMax: 2024-01-09 13:50:08.663 | timeDiff: 3023996.98900008
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 36
using 'ggh4x' package ...
p3000/Proteomics/TIMSTOFFLEX_1/antdit_20240108/zip/20240108_006_autoQC03dia_25ng.d.zip
p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231219/zip/20231219_002_autoQC03dda_25ng_stdPASEF.d.zip
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 14:57:10.00641 | timeMax: 2024-01-09 14:57:10.007064 | timeDiff: 1814400.00065374
nFacets: 4
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
input timeRange: 7776000 | timeMin: 2023-12-19 13:57:10.006 | timeMax: 2024-01-09 13:57:10.007 | timeDiff: 1814400.00099993
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 36
using 'ggh4x' package ...
nrow dataFiltered(): 26
using 'ggh4x' package ...
NA
p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231219/zip/20231219_002_autoQC03dda_25ng_stdPASEF.d.zip
NA
p3000/Proteomics/TIMSTOFFLEX_1/antdit_20240108/zip/20240108_006_autoQC03dia_25ng.d.zip
NA
NA
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 14:57:53.892352 | timeMax: 2024-01-09 14:57:53.892926 | timeDiff: 1814400.00057459
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 90
using 'ggh4x' package ...
nrow dataFiltered(): 26
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 13:57:53.89235 | timeMax: 2024-01-09 13:57:53.89293 | timeDiff: 1814400.00057983
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 13:57:53.892 | timeMax: 2024-01-09 13:57:53.893 | timeDiff: 1814400.00099993
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
nFacets: 2
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 54
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-02 13:57:56.604 | timeMax: 2024-01-09 13:57:53.893 | timeDiff: 3283197.2889998
nFacets: 3
nrow dataFiltered(): 377
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 144
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 416
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
NA
input timeRange: 7776000 | timeMin: 2023-11-27 13:57:11.584 | timeMax: 2024-01-09 13:57:10.007 | timeDiff: 3715198.42299986
nFacets: 1
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 306
using 'ggh4x' package ...
nrow dataFiltered(): 13
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 36
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-19 15:15:03.455849 | timeMax: 2024-01-09 15:15:03.456433 | timeDiff: 1814400.00058341
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 90
using 'ggh4x' package ...
nrow dataFiltered(): 26
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 14:15:03.45585 | timeMax: 2024-01-09 14:15:03.45643 | timeDiff: 1814400.00057983
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-19 14:15:03.456 | timeMax: 2024-01-09 14:15:03.456 | timeDiff: 1814400
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 90
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 26
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 36
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-11-28 14:15:07.103 | timeMax: 2024-01-09 14:15:03.456 | timeDiff: 3628796.35300016
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 36
using 'ggh4x' package ...
NA
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 312
using 'ggh4x' package ...
NA