Listening on http://127.0.0.1:34813 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-19 15:33:17.536062 | timeMax: 2024-01-09 15:33:17.53666 | timeDiff: 1814400.00059748 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-19 14:33:17.536 | timeMax: 2024-01-09 14:33:17.537 | timeDiff: 1814400.00099993 nFacets: 4 nrow dataFiltered(): 352 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 15:34:05.92859 | timeMax: 2024-01-09 15:34:05.929203 | timeDiff: 5184000.00061297 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-10 14:34:05.929 | timeMax: 2024-01-09 14:34:05.929 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... vals$rawDiag: TRUE p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20240104_003_autoQC03dda.raw... NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_003_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 15:39:38.348549 | timeMax: 2024-01-09 15:39:38.34913 | timeDiff: 5184000.00058079 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-10 14:39:38.34855 | timeMax: 2024-01-09 14:39:38.34913 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-10 14:39:38.349 | timeMax: 2024-01-09 14:39:38.349 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 15:40:10.275018 | timeMax: 2024-01-09 15:40:10.275601 | timeDiff: 5184000.00058246 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-10 14:40:10.275 | timeMax: 2024-01-09 14:40:10.276 | timeDiff: 5184000.00099993 nFacets: 1 nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 16:29:40.905149 | timeMax: 2024-01-09 16:29:40.905745 | timeDiff: 5184000.00059533 nFacets: 4 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-10 15:29:40.90515 | timeMax: 2024-01-09 15:29:40.90574 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-10 15:29:40.905 | timeMax: 2024-01-09 15:29:40.906 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... Execution halted Warning message: agg could not write to the given file