Listening on http://127.0.0.1:43737 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 16:46:31.711139 | timeMax: 2024-01-09 16:46:31.711725 | timeDiff: 5184000.00058603 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-10 15:46:31.711 | timeMax: 2024-01-09 15:46:31.712 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 17:07:35.245564 | timeMax: 2024-01-09 17:07:35.246156 | timeDiff: 5184000.00059199 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-10 16:07:35.246 | timeMax: 2024-01-09 16:07:35.246 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 17:08:03.879365 | timeMax: 2024-01-09 17:08:03.879949 | timeDiff: 5184000.00058436 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-10 16:08:03.879 | timeMax: 2024-01-09 16:08:03.88 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... NA vals$rawrr: TRUE plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C3000_025_autoQC03dia_2ul.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... Plotting chromatograms ... vals$rawrr: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 585 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 1 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 26 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 1170 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 5 nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 17:18:23.402694 | timeMax: 2024-01-09 17:18:23.403283 | timeDiff: 5184000.00058889 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2023-11-10 16:18:23.403 | timeMax: 2024-01-09 16:18:23.403 | timeDiff: 5184000 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 17:23:04.652869 | timeMax: 2024-01-09 17:23:04.653479 | timeDiff: 5184000.00061011 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-10 16:23:04.653 | timeMax: 2024-01-09 16:23:04.653 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_020_autoQC01.raw NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-10 17:23:56.841999 | timeMax: 2024-01-09 17:23:56.842602 | timeDiff: 5184000.00060344 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-10 16:23:56.842 | timeMax: 2024-01-09 16:23:56.843 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing non-finite values (`stat_smooth()`). Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-10-12 16:23:05.879 | timeMax: 2024-01-09 16:23:04.653 | timeDiff: 7689598.77400017 nFacets: 4 nrow dataFiltered(): 2384 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA input timeRange: 126144000 | timeMin: 2023-10-12 16:23:05.879 | timeMax: 2024-01-09 17:24:42.126149 | timeDiff: 7689696.24714899 nFacets: 4 nrow dataFiltered(): 2384 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 126144000 | timeMin: 2023-10-12 16:23:05.879 | timeMax: 2024-01-09 16:24:42.126 | timeDiff: 7689696.24699998 nFacets: 4 nrow dataFiltered(): 2384 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 126144000 | timeMin: 2020-02-26 16:24:43.811 | timeMax: 2024-01-09 16:24:42.126 | timeDiff: 122083198.315 nFacets: 4 nrow dataFiltered(): 15344 using 'ggh4x' package ... Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 34032 using 'ggh4x' package ... Warning: Removed 192 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 35408 using 'ggh4x' package ... Warning: Removed 62 rows containing missing values (`geom_point()`).