Listening on http://127.0.0.1:41139
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-10 21:18:27.011428 | timeMax: 2024-01-09 21:18:27.012024 | timeDiff: 5184000.00059581
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-11-10 20:18:27.01143 | timeMax: 2024-01-09 20:18:27.01202 | timeDiff: 5184000.00059009
nFacets: 5
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-11-10 20:18:27.011 | timeMax: 2024-01-09 20:18:27.012 | timeDiff: 5184000.00100017
nFacets: 5
nFacets: 1
nrow dataFiltered(): 522
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
nrow dataFiltered(): 1170
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
input timeRange: 7776000 | timeMin: 2023-12-18 20:19:12.575 | timeMax: 2024-01-09 20:18:27.012 | timeDiff: 1900754.43700004
nFacets: 4
nrow dataFiltered(): 312
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 180
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 432
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 432
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-23 20:19:50.21 | timeMax: 2023-11-14 20:19:50.21 | timeDiff: 1900800
nFacets: 4
nrow dataFiltered(): 320
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-10-23 20:19:50.21 | timeMax: 2024-01-09 20:20:04.4871 | timeDiff: 6739214.27710009
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 9 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-10-23 20:19:50.21 | timeMax: 2024-01-09 20:20:04.487 | timeDiff: 6739214.27699995
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 9 rows containing missing values (`geom_point()`).
vals$rawrr: TRUE
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
p33879/Proteomics/FUSION_2/chiawei_20240108/20240108_010_autoQC01_newEmitter.raw
plotClick: 
fn has changed to /srv/www/htdocs//p33879/Proteomics/FUSION_2/chiawei_20240108/20240108_010_autoQC01_newEmitter.raw
Reading raw file: /srv/www/htdocs//p33879/Proteomics/FUSION_2/chiawei_20240108/20240108_010_autoQC01_newEmitter.raw
Plotting chromatograms ...
Read 22032 items
Plotting chromatograms ...


Execution halted