Listening on http://127.0.0.1:33473 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 08:57:16.247502 | timeMax: 2024-01-10 08:57:16.248085 | timeDiff: 5184000.00058341 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 07:57:16.248 | timeMax: 2024-01-10 07:57:16.248 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-31 07:57:18.284 | timeMax: 2024-01-10 07:57:16.248 | timeDiff: 863997.963999987 nFacets: 4 nrow dataFiltered(): 80 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-27 07:57:46.323 | timeMax: 2024-01-10 07:57:16.248 | timeDiff: 1209569.92499995 nFacets: 4 nrow dataFiltered(): 80 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-25 07:58:05.424 | timeMax: 2024-01-10 07:57:16.248 | timeDiff: 1382350.82399988 nFacets: 4 nrow dataFiltered(): 80 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-20 07:58:10.013 | timeMax: 2024-01-10 07:57:16.248 | timeDiff: 1814346.2349999 nFacets: 4 nrow dataFiltered(): 144 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 09:04:08.508485 | timeMax: 2024-01-10 09:04:08.509069 | timeDiff: 5184000.00058341 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 08:04:08.508 | timeMax: 2024-01-10 08:04:08.509 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 09:38:40.74658 | timeMax: 2024-01-10 09:38:40.747169 | timeDiff: 5184000.00058866 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 08:38:40.747 | timeMax: 2024-01-10 08:38:40.747 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 09:43:24.077044 | timeMax: 2024-01-10 09:43:24.077659 | timeDiff: 5184000.00061512 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 08:43:24.077 | timeMax: 2024-01-10 08:43:24.078 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_005_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_002_autoQC01.raw NA p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_012_autoQC01.raw p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_003_autoQC01.raw NA p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_012_autoQC01.raw reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... NA nFacets: 5 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 1170 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 10:10:46.237754 | timeMax: 2024-01-10 10:10:46.238377 | timeDiff: 5184000.00062346 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 09:10:46.238 | timeMax: 2024-01-10 09:10:46.238 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). p33727/Proteomics/EXPLORIS_2/analytic_20231215/20231215_C33727_013_autoQC01.raw vals$rawDiag: TRUE p33773/Proteomics/EXPLORIS_2/analytic_20231219/20231219_C33773_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_001_autoQC01.raw p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_001_autoQC01.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20231220_C33652_001_autoQC01.raw... vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p33652/Proteomics/EXPLORIS_2/analytic_20231220/20231220_C33652_001_autoQC01.raw Plotting chromatograms ... Read 22032 items plotCycleTime NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 10:23:19.958694 | timeMax: 2024-01-10 10:23:19.959305 | timeDiff: 5184000.00061083 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-11 09:23:19.959 | timeMax: 2024-01-10 09:23:19.959 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 10:43:02.034452 | timeMax: 2024-01-10 10:43:02.035036 | timeDiff: 5184000.00058389 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 10:43:05.441681 | timeMax: 2024-01-10 10:43:05.442292 | timeDiff: 5184000.00061083 nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-11 09:43:02.034 | timeMax: 2024-01-10 09:43:02.035 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 09:43:05.442 | timeMax: 2024-01-10 09:43:05.442 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 10:43:29.325646 | timeMax: 2024-01-10 10:43:29.32626 | timeDiff: 5184000.00061345 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 09:43:29.326 | timeMax: 2024-01-10 09:43:29.326 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 11:35:40.099951 | timeMax: 2024-01-10 11:35:40.100515 | timeDiff: 5184000.00056362 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 10:35:40.09995 | timeMax: 2024-01-10 10:35:40.10051 | timeDiff: 5184000.00056028 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 10:35:40.1 | timeMax: 2024-01-10 10:35:40.101 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 11:52:22.103871 | timeMax: 2024-01-10 11:52:22.104446 | timeDiff: 5184000.00057459 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 10:52:22.10387 | timeMax: 2024-01-10 10:52:22.10445 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 10:52:22.104 | timeMax: 2024-01-10 10:52:22.104 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... NA p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//NA NA plotClick: plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/TIMSTOF_1/spfammatter_20231120/zip/20231120_006_autoQC03_diaPASEF.d.zip NA nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip NA p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_027_autoQC03dia.d.zip p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_053_autoQC03dia.d.zip NA p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_053_autoQC03dia.d.zip p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_DIA/zip/20231219_013_autoQC03dia.d.zip NA nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... NA p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_008_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 12:08:29.159019 | timeMax: 2024-01-10 12:08:29.159595 | timeDiff: 5184000.00057673 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 11:08:29.159 | timeMax: 2024-01-10 11:08:29.16 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 256806 autoQC01 module APEX long nrow: 996 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 26 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 12:08:39.488642 | timeMax: 2024-01-10 12:08:39.489316 | timeDiff: 5184000.00067496 nFacets: 4 autoQC01 module APEX long nrow: 1008 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 50 rows containing missing values (`geom_point()`). vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-11 11:08:39.489 | timeMax: 2024-01-10 11:08:39.489 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/spfammatter_20240103/20240103_003_autoQC03dda.raw NA NA p33795/Proteomics/EXPLORIS_1/analytic_20240103/20240103_C33795_036_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 12:22:43.652414 | timeMax: 2024-01-10 12:22:43.652984 | timeDiff: 5184000.00057006 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 11:22:43.652 | timeMax: 2024-01-10 11:22:43.653 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 36 using 'ggh4x' package ... p33383/Proteomics/TIMSTOF_1/heinzmann_20231218_/zip/20231218_001_autoQC03dia.d.zip p33662/Proteomics/TIMSTOF_1/analytic_20231215/zip/20231215_004_autoQC03dia.d.zip p33670/Proteomics/TIMSTOF_1/analytic_20231215/zip/20231215_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33670/Proteomics/TIMSTOF_1/analytic_20231215/zip/20231215_001_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 13:05:18.474947 | timeMax: 2024-01-10 13:05:18.475515 | timeDiff: 5184000.00056791 nFacets: 4 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 12:05:18.47495 | timeMax: 2024-01-10 12:05:18.47552 | timeDiff: 5184000.0005703 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 12:05:18.475 | timeMax: 2024-01-10 12:05:18.476 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231219/zip/20231219_002_autoQC03dda_25ng_stdPASEF.d.zip p3000/Proteomics/TIMSTOFFLEX_1/antdit_20240108/zip/20240108_006_autoQC03dia_25ng.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 13:52:31.435735 | timeMax: 2024-01-10 13:52:31.436307 | timeDiff: 5184000.00057268 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 12:52:31.436 | timeMax: 2024-01-10 12:52:31.436 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). p33324/Proteomics/EXPLORIS_2/analytic_20231124/20231124_C33324_001b_autoQC01.raw nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1200 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 0 nFacets: 1 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 13:59:29.113059 | timeMax: 2024-01-10 13:59:29.113766 | timeDiff: 5184000.00070739 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 12:59:29.11306 | timeMax: 2024-01-10 12:59:29.11377 | timeDiff: 5184000.00071001 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 12:59:29.113 | timeMax: 2024-01-10 12:59:29.114 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). p33640/Proteomics/EXPLORIS_1/analytic_20240110/20240110_C33640_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 14:14:10.610601 | timeMax: 2024-01-10 14:14:10.611174 | timeDiff: 5184000.00057268 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-11 13:14:10.611 | timeMax: 2024-01-10 13:14:10.611 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX wide nrow: 256839 autoQC01 module APEX long nrow: 804 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 44 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 286 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 14:17:09.274434 | timeMax: 2024-01-10 14:17:09.275008 | timeDiff: 5184000.00057411 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-11 13:17:09.27443 | timeMax: 2024-01-10 13:17:09.27501 | timeDiff: 5184000.00058007 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 13:17:09.274 | timeMax: 2024-01-10 13:17:09.275 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-01-03 13:17:22.113 | timeMax: 2024-01-10 13:17:09.275 | timeDiff: 604787.162000179 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 14:23:34.373605 | timeMax: 2024-01-10 14:23:34.374183 | timeDiff: 5184000.00057769 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-11 13:23:34.3736 | timeMax: 2024-01-10 13:23:34.37418 | timeDiff: 5184000.00057983 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 14:38:38.537289 | timeMax: 2024-01-10 14:38:38.537869 | timeDiff: 5184000.00058031 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-11 13:38:38.53729 | timeMax: 2024-01-10 13:38:38.53787 | timeDiff: 5184000.00058007 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 14:54:15.119637 | timeMax: 2024-01-10 14:54:15.120209 | timeDiff: 5184000.00057173 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 13:54:15.11964 | timeMax: 2024-01-10 13:54:15.12021 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 13:54:15.12 | timeMax: 2024-01-10 13:54:15.12 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... p33795/Proteomics/EXPLORIS_1/analytic_20240103/20240103_C33795_037_autoQC03dia.raw p33795/Proteomics/EXPLORIS_1/analytic_20240103/20240103_C33795_037_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 15:12:42.911404 | timeMax: 2024-01-10 15:12:42.911989 | timeDiff: 5184000.00058484 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 14:12:42.9114 | timeMax: 2024-01-10 14:12:42.91199 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 14:12:42.911 | timeMax: 2024-01-10 14:12:42.912 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 15:14:33.19021 | timeMax: 2024-01-10 15:14:33.190927 | timeDiff: 5184000.00071645 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-11 14:14:33.19021 | timeMax: 2024-01-10 14:14:33.19093 | timeDiff: 5184000.00072002 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-11 14:14:33.19 | timeMax: 2024-01-10 14:14:33.191 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... NA p3000/Proteomics/TIMSTOFFLEX_1/antdit_20240108/zip/20240108_003_autoQC03dda_25ng.d.zip p3000/Proteomics/TIMSTOFFLEX_1/antdit_20240108/zip/20240108_002_autoQC03dda_25ng.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 15:16:21.956818 | timeMax: 2024-01-10 15:16:21.957407 | timeDiff: 5184000.00058961 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-11 14:16:21.957 | timeMax: 2024-01-10 14:16:21.957 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 15:24:26.854317 | timeMax: 2024-01-10 15:24:26.854897 | timeDiff: 5184000.00057983 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 14:24:26.854 | timeMax: 2024-01-10 14:24:26.855 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 15:44:32.753111 | timeMax: 2024-01-10 15:44:32.753703 | timeDiff: 5184000.00059175 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 14:44:32.753 | timeMax: 2024-01-10 14:44:32.754 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 5 nrow dataFiltered(): 1170 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 15:54:23.069911 | timeMax: 2024-01-10 15:54:23.070486 | timeDiff: 5184000.00057507 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 14:54:23.07 | timeMax: 2024-01-10 14:54:23.07 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... NA p33552/Proteomics/EXPLORIS_2/analytic_20231130/20231130_C33552_021_autoQC4L.raw NA nrow dataFiltered(): 234 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 16:43:55.609368 | timeMax: 2024-01-10 16:43:55.609951 | timeDiff: 5184000.00058293 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 15:43:55.609 | timeMax: 2024-01-10 15:43:55.61 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-11 16:52:48.859687 | timeMax: 2024-01-10 16:52:48.860281 | timeDiff: 5184000.00059414 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-11 15:52:48.86 | timeMax: 2024-01-10 15:52:48.86 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 07:39:37.748707 | timeMax: 2024-01-11 07:39:37.749294 | timeDiff: 5184000.00058699 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 06:39:37.749 | timeMax: 2024-01-11 06:39:37.749 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 07:50:23.488775 | timeMax: 2024-01-11 07:50:23.489424 | timeDiff: 5184000.00064874 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 06:50:23.489 | timeMax: 2024-01-11 06:50:23.489 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 09:35:37.359381 | timeMax: 2024-01-11 09:35:37.359963 | timeDiff: 5184000.00058246 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 08:35:37.359 | timeMax: 2024-01-11 08:35:37.36 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_009_autoQC01.raw p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_005_autoQC01.raw p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_005_autoQC01.raw NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 585 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw plotClick: NA p33862/Proteomics/LUMOS_2/analytic_20240108/20240108_C33862_010_autoQC03dda.raw NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw NA input timeRange: 7776000 | timeMin: 2023-12-24 08:35:58.512 | timeMax: 2024-01-11 08:35:37.36 | timeDiff: 1555178.84799981 nFacets: 2 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... NA p33642/Proteomics/LUMOS_2/analytic_20240104/20240104_C33642_014_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 09:42:34.311504 | timeMax: 2024-01-11 09:42:34.312072 | timeDiff: 5184000.00056839 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 08:42:34.312 | timeMax: 2024-01-11 08:42:34.312 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 10:05:17.444509 | timeMax: 2024-01-11 10:05:17.445078 | timeDiff: 5184000.00056887 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 09:05:17.445 | timeMax: 2024-01-11 09:05:17.445 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 10:06:57.170845 | timeMax: 2024-01-11 10:06:57.171415 | timeDiff: 5184000.00056934 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-12 09:06:57.17085 | timeMax: 2024-01-11 09:06:57.17141 | timeDiff: 5184000.00055981 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-12 09:06:57.171 | timeMax: 2024-01-11 09:06:57.171 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 10:22:09.734635 | timeMax: 2024-01-11 10:22:09.735209 | timeDiff: 5184000.00057387 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 09:22:09.735 | timeMax: 2024-01-11 09:22:09.735 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 585 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_004_autoQC03dda.raw NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw plotClick: NA plotClick: p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 10:24:57.23003 | timeMax: 2024-01-11 10:24:57.230615 | timeDiff: 5184000.0005846 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 09:24:57.23 | timeMax: 2024-01-11 09:24:57.231 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 585 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA autoQC01 module APEX wide nrow: 256872 autoQC01 module APEX long nrow: 912 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 26 rows containing missing values (`geom_point()`). p33642/Proteomics/LUMOS_2/analytic_20240104/20240110_C33642_001_autoQC01.raw NA nFacets: 3 nrow dataFiltered(): 585 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw p33678/Proteomics/LUMOS_2/analytic_20231214/20231214_C33678_034_autoQC03dda.raw p33608/Proteomics/LUMOS_2/analytic_20231219/20231219_C33608_007_autoQC03dda.raw NA nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 11:20:07.083904 | timeMax: 2024-01-11 11:20:07.084615 | timeDiff: 5184000.00071049 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 10:20:07.084 | timeMax: 2024-01-11 10:20:07.085 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_016_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_005_autoQC01.raw NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_005_autoQC01.raw NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 585 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_010_autoQC03dda.raw p25857/Proteomics/LUMOS_2/analytic_20210903_phospho/20210908_018_autoQC4L.raw NA p33514/Proteomics/LUMOS_2/analytic_20231128/20231128_C33514_030_autoQC4L.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 11:47:36.458046 | timeMax: 2024-01-11 11:47:36.45872 | timeDiff: 5184000.00067449 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-12 10:47:36.45805 | timeMax: 2024-01-11 10:47:36.45872 | timeDiff: 5184000.00066996 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-12 10:47:36.458 | timeMax: 2024-01-11 10:47:36.459 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 5 nrow dataFiltered(): 1170 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 585 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 11:48:33.562031 | timeMax: 2024-01-11 11:48:33.562605 | timeDiff: 5184000.00057387 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 10:48:33.562 | timeMax: 2024-01-11 10:48:33.563 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 12:44:13.251406 | timeMax: 2024-01-11 12:44:13.251983 | timeDiff: 5184000.00057673 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 11:44:13.251 | timeMax: 2024-01-11 11:44:13.252 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 13:25:20.30452 | timeMax: 2024-01-11 13:25:20.305091 | timeDiff: 5184000.00057173 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 12:25:20.305 | timeMax: 2024-01-11 12:25:20.305 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 611 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 14:20:31.671402 | timeMax: 2024-01-11 14:20:31.671972 | timeDiff: 5184000.00056982 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-12 13:20:31.6714 | timeMax: 2024-01-11 13:20:31.67197 | timeDiff: 5184000.00057006 autoQC01 module APEX wide nrow: 256883 autoQC01 module APEX long nrow: 972 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 26 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 924 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 26 rows containing missing values (`geom_point()`). p33688/Proteomics/LUMOS_2/analytic_20240111/20240110_C33688_001_autoQC01.raw plot_click: p33688/Proteomics/LUMOS_2/analytic_20240111/20240110_C33688_001_autoQC01.raw fn has changed to /srv/www/htdocs//p33688/Proteomics/LUMOS_2/analytic_20240111/20240110_C33688_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p33688/Proteomics/LUMOS_2/analytic_20240111/20240110_C33688_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 611 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-11-12 13:20:31.671 | timeMax: 2024-01-11 13:20:31.672 | timeDiff: 5184000.00099993 nFacets: 3 nrow dataFiltered(): 611 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 14:32:07.30743 | timeMax: 2024-01-11 14:32:07.308342 | timeDiff: 5184000.00091243 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 13:32:07.307 | timeMax: 2024-01-11 13:32:07.308 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 611 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw plotClick: NA NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_011_autoQC03dda.raw plotClick: plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 14:34:49.201368 | timeMax: 2024-01-11 14:34:49.20227 | timeDiff: 5184000.00090194 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 13:34:49.201 | timeMax: 2024-01-11 13:34:49.202 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 14:53:40.398902 | timeMax: 2024-01-11 14:53:40.399479 | timeDiff: 5184000.00057673 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 13:53:40.399 | timeMax: 2024-01-11 13:53:40.399 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 14:53:46.366308 | timeMax: 2024-01-11 14:53:46.366884 | timeDiff: 5184000.00057602 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 13:53:46.366 | timeMax: 2024-01-11 13:53:46.367 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_10_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 16:00:10.918117 | timeMax: 2024-01-11 16:00:10.918813 | timeDiff: 5184000.00069618 nFacets: 4 nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2023-11-12 15:00:10.91812 | timeMax: 2024-01-11 15:00:10.91881 | timeDiff: 5184000.00068998 nFacets: 3 nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-12 15:00:10.918 | timeMax: 2024-01-11 15:00:10.919 | timeDiff: 5184000.00099993 nFacets: 3 nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_012_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 16:35:37.617992 | timeMax: 2024-01-11 16:35:37.619116 | timeDiff: 5184000.00112414 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1680 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 15:35:37.618 | timeMax: 2024-01-11 15:35:37.619 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1680 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_001_autoQC01.raw NA p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_001_autoQC01.raw NA p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_001_autoQC01.raw NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 16:44:36.382473 | timeMax: 2024-01-11 16:44:36.383167 | timeDiff: 5184000.00069356 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 15:44:36.382 | timeMax: 2024-01-11 15:44:36.383 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 17:07:58.757435 | timeMax: 2024-01-11 17:07:58.758076 | timeDiff: 5184000.00064087 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1680 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 16:07:58.757 | timeMax: 2024-01-11 16:07:58.758 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1680 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_001_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240110_12_autoQC01.raw NA p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_064_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-12 17:41:31.269448 | timeMax: 2024-01-11 17:41:31.270032 | timeDiff: 5184000.00058389 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-12 16:41:31.269 | timeMax: 2024-01-11 16:41:31.27 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_016_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 08:29:58.01811 | timeMax: 2024-01-12 08:29:58.018693 | timeDiff: 5184000.00058365 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-13 07:29:58.01811 | timeMax: 2024-01-12 07:29:58.01869 | timeDiff: 5184000.00057983 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 09:01:07.53328 | timeMax: 2024-01-12 09:01:07.533867 | timeDiff: 5184000.00058722 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 08:01:07.533 | timeMax: 2024-01-12 08:01:07.534 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_012_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_012_autoQC03dda.raw p33212/Proteomics/LUMOS_2/cfortes_20240108/20240108_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240108/20240108_004_autoQC03dia.raw p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_012_autoQC03dda.raw plotClick: NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_012_autoQC03dda.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 09:03:47.002864 | timeMax: 2024-01-12 09:03:47.00348 | timeDiff: 5184000.00061607 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 08:03:47.003 | timeMax: 2024-01-12 08:03:47.003 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 09:08:40.490359 | timeMax: 2024-01-12 09:08:40.490932 | timeDiff: 5184000.00057244 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 08:08:40.49 | timeMax: 2024-01-12 08:08:40.491 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). NA nFacets: 5 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 1118 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 09:20:56.475697 | timeMax: 2024-01-12 09:20:56.476272 | timeDiff: 5184000.00057459 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 08:20:56.476 | timeMax: 2024-01-12 08:20:56.476 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 10:44:48.750455 | timeMax: 2024-01-12 10:44:48.751031 | timeDiff: 5184000.00057673 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 09:44:48.75 | timeMax: 2024-01-12 09:44:48.751 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 10:44:53.686735 | timeMax: 2024-01-12 10:44:53.68731 | timeDiff: 5184000.0005753 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-13 09:44:53.687 | timeMax: 2024-01-12 09:44:53.687 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 11:16:22.604524 | timeMax: 2024-01-12 11:16:22.605098 | timeDiff: 5184000.00057459 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 10:16:22.605 | timeMax: 2024-01-12 10:16:22.605 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 12:21:39.921199 | timeMax: 2024-01-12 12:21:39.921783 | timeDiff: 5184000.00058436 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 11:21:39.921 | timeMax: 2024-01-12 11:21:39.922 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_001_autoQC01.raw p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_010_autoQC01.raw input timeRange: 7776000 | timeMin: 2023-11-13 11:21:40.865 | timeMax: 2024-01-12 11:21:39.922 | timeDiff: 5183999.05699992 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 286 using 'ggh4x' package ... NA p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_011_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 12:23:32.399563 | timeMax: 2024-01-12 12:23:32.400148 | timeDiff: 5184000.00058532 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 11:23:32.4 | timeMax: 2024-01-12 11:23:32.4 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). NA p33640/Proteomics/EXPLORIS_1/analytic_20240110/20240110_C33640_006_autoQC01.raw p33640/Proteomics/EXPLORIS_1/analytic_20240110/20240110_C33640_006_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). p33726/Proteomics/LUMOS_2/analytic_20240111/20240110_C33726_005_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_02_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_10_autoQC03dia.raw autoQC01 module APEX wide nrow: 257004 autoQC01 module APEX long nrow: 1296 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 48 rows containing missing values (`geom_point()`). Warning: Removed 48 rows containing missing values (`geom_point()`). Warning: Removed 48 rows containing missing values (`geom_point()`). Warning: Removed 48 rows containing missing values (`geom_point()`). Warning: Removed 48 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 14:15:27.291934 | timeMax: 2024-01-12 14:15:27.292523 | timeDiff: 5184000.00058913 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-13 13:15:27.29193 | timeMax: 2024-01-12 13:15:27.29252 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-13 13:15:27.292 | timeMax: 2024-01-12 13:15:27.293 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_03_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_10_autoQC03dia.raw NA p33640/Proteomics/LUMOS_1/kretschmer_20240105/20240105_005_autoQC03dda.raw NA p33640/Proteomics/LUMOS_1/kretschmer_20240105/20240105_005_autoQC03dda.raw NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_006_autoQC03dda.raw nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 14:50:51.690137 | timeMax: 2024-01-12 14:50:51.690917 | timeDiff: 5184000.00078011 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 15:02:58.781298 | timeMax: 2024-01-12 15:02:58.781876 | timeDiff: 5184000.0005784 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 14:02:58.781 | timeMax: 2024-01-12 14:02:58.782 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 27 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 15:08:21.856129 | timeMax: 2024-01-12 15:08:21.856705 | timeDiff: 5184000.0005765 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-13 14:08:21.85613 | timeMax: 2024-01-12 14:08:21.85671 | timeDiff: 5184000.00058007 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 15:11:06.15668 | timeMax: 2024-01-12 15:11:06.157257 | timeDiff: 5184000.00057626 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 15:11:15.991973 | timeMax: 2024-01-12 15:11:15.992554 | timeDiff: 5184000.00058103 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 14:11:15.992 | timeMax: 2024-01-12 14:11:15.993 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing non-finite values (`stat_smooth()`). Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat)