Listening on http://127.0.0.1:37533 Loading required package: shinydashboard Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-13 20:14:16.847872 | timeMax: 2024-01-12 20:14:16.848457 | timeDiff: 5184000.00058436 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-13 19:14:16.848 | timeMax: 2024-01-12 19:14:16.848 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_027_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_027_autoQC03dia.d.zip NA p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_053_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_fractions_DDA/zip/20231219_053_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-14 06:29:39.527952 | timeMax: 2024-01-13 06:29:39.528513 | timeDiff: 5184000.00056171 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-14 05:29:39.528 | timeMax: 2024-01-13 05:29:39.529 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p29033/Proteomics/TIMSTOF_1/radhika_20231219_primaryhepatocytes_DIA/zip/20231219_002_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-15 15:22:38.675313 | timeMax: 2024-01-14 15:22:38.675876 | timeDiff: 5184000.00056291 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-15 14:22:38.675 | timeMax: 2024-01-14 14:22:38.676 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 08:22:22.757151 | timeMax: 2024-01-15 08:22:22.757719 | timeDiff: 5184000.00056791 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 07:22:22.757 | timeMax: 2024-01-15 07:22:22.758 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 09:11:35.367079 | timeMax: 2024-01-15 09:11:35.367661 | timeDiff: 5184000.00058126 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 08:11:35.367 | timeMax: 2024-01-15 08:11:35.368 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... p33726/Proteomics/TIMSTOF_1/analytic_20240112_/zip/20240112_001_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 09:51:48.049239 | timeMax: 2024-01-15 09:51:48.049815 | timeDiff: 5184000.00057673 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 08:51:48.049 | timeMax: 2024-01-15 08:51:48.05 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nFacets: 5 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 1118 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 10:56:24.011134 | timeMax: 2024-01-15 10:56:24.011725 | timeDiff: 5184000.0005908 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-16 09:56:24.01113 | timeMax: 2024-01-15 09:56:24.01172 | timeDiff: 5184000.00059009 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 12:02:49.81777 | timeMax: 2024-01-15 12:02:49.818334 | timeDiff: 5184000.0005641 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 11:02:49.818 | timeMax: 2024-01-15 11:02:49.818 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 12:16:36.773526 | timeMax: 2024-01-15 12:16:36.774115 | timeDiff: 5184000.00058937 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 11:16:36.774 | timeMax: 2024-01-15 11:16:36.774 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_016_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_016_autoQC01.raw p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_016_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). p33640/Proteomics/EXPLORIS_1/analytic_20240110/20240110_C33640_006_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/spfammatter_20240103/20240103_003_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_017_autoQC03dda.raw NA autoQC01 module APEX wide nrow: 257092 autoQC01 module APEX long nrow: 924 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 26 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 14:16:22.901787 | timeMax: 2024-01-15 14:16:22.902377 | timeDiff: 5184000.00059032 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-16 13:16:22.90179 | timeMax: 2024-01-15 13:16:22.90238 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-16 13:16:22.902 | timeMax: 2024-01-15 13:16:22.902 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... NA p33726/Proteomics/TIMSTOF_1/analytic_20240112_/zip/20240112_011_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33726/Proteomics/TIMSTOF_1/analytic_20240112_/zip/20240112_011_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 14:55:15.861028 | timeMax: 2024-01-15 14:55:15.86161 | timeDiff: 5184000.00058222 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 13:55:15.861 | timeMax: 2024-01-15 13:55:15.862 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... NA p32853/Proteomics/TIMSTOF_1/analytic_20231207/zip/20231207_001_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p32853/Proteomics/TIMSTOF_1/analytic_20231207/zip/20231207_001_autoQC03dda.d.zip plotClick: NA plotClick: p32853/Proteomics/TIMSTOF_1/analytic_20231207/zip/20231207_001_autoQC03dda.d.zip p33875/Proteomics/TIMSTOF_1/spfammatter_20240112_/zip/20240112_012_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33875/Proteomics/TIMSTOF_1/spfammatter_20240112_/zip/20240112_012_autoQC03dia.d.zip NA p33875/Proteomics/TIMSTOF_1/spfammatter_20240112_/zip/20240112_012_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 15:21:23.316726 | timeMax: 2024-01-15 15:21:23.317434 | timeDiff: 5184000.00070786 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-16 14:21:23.31673 | timeMax: 2024-01-15 14:21:23.31743 | timeDiff: 5184000.0007 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 14:21:23.317 | timeMax: 2024-01-15 14:21:23.317 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240115/20240115_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240115/20240115_002_autoQC01.raw NA vals$rawDiag: TRUE plotChargeState reading index for 20240115_002_autoQC01.raw... vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240115/20240115_002_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 15:25:32.469611 | timeMax: 2024-01-15 15:25:32.470204 | timeDiff: 5184000.00059271 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 14:25:32.47 | timeMax: 2024-01-15 14:25:32.47 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 15:29:03.676044 | timeMax: 2024-01-15 15:29:03.676628 | timeDiff: 5184000.00058389 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 14:29:03.676 | timeMax: 2024-01-15 14:29:03.677 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 16:12:30.3325 | timeMax: 2024-01-15 16:12:30.333498 | timeDiff: 5184000.00099826 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 16:12:34.98211 | timeMax: 2024-01-15 16:12:34.98307 | timeDiff: 5184000.00095963 nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-16 15:12:30.333 | timeMax: 2024-01-15 15:12:30.334 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 15:12:34.982 | timeMax: 2024-01-15 15:12:34.983 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1696 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 1696 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1696 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1696 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1696 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA p33780/Proteomics/LUMOS_1/vismi_20231220/20231220_006_autoQC03dda.raw NA p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_030_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_030_autoQC03dda.raw NA p33898/Proteomics/LUMOS_1/analytic_20240111/20240111_C33898_030_autoQC03dda.raw plotClick: NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_10_autoQC03dia.raw nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 16:16:49.259866 | timeMax: 2024-01-15 16:16:49.26069 | timeDiff: 5184000.00082469 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-16 15:16:49.25987 | timeMax: 2024-01-15 15:16:49.26069 | timeDiff: 5184000.00081992 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-16 15:16:49.26 | timeMax: 2024-01-15 15:16:49.261 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... p33875/Proteomics/TIMSTOF_1/spfammatter_20240112_/zip/20240112_012_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33875/Proteomics/TIMSTOF_1/spfammatter_20240112_/zip/20240112_012_autoQC03dia.d.zip NA input timeRange: 7776000 | timeMin: 2023-11-09 15:16:52.528 | timeMax: 2024-01-15 15:16:49.261 | timeDiff: 5788796.7329998 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... NA p3000/Proteomics/TIMSTOF_1/spfammatter_20231120/zip/20231120_006_autoQC03_diaPASEF.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 16:25:27.197561 | timeMax: 2024-01-15 16:25:27.198147 | timeDiff: 5184000.00058627 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 15:25:27.198 | timeMax: 2024-01-15 15:25:27.198 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p33726/Proteomics/TIMSTOF_1/analytic_20240112_/zip/20240112_022_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 17:02:09.8426 | timeMax: 2024-01-15 17:02:09.843184 | timeDiff: 5184000.00058436 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 16:02:09.843 | timeMax: 2024-01-15 16:02:09.843 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-16 17:19:01.265857 | timeMax: 2024-01-15 17:19:01.266446 | timeDiff: 5184000.00058866 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-16 16:19:01.266 | timeMax: 2024-01-15 16:19:01.266 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nFacets: 5 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 1118 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA input timeRange: 7776000 | timeMin: 2023-12-23 16:19:05.763 | timeMax: 2024-01-15 16:19:01.266 | timeDiff: 1987195.50300002 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA p33879/Proteomics/FUSION_2/chiawei_20240108/20240108_011_autoQC03dia_newEmitter.raw plotClick: fn has changed to /srv/www/htdocs//p33879/Proteomics/FUSION_2/chiawei_20240108/20240108_011_autoQC03dia_newEmitter.raw NA p33879/Proteomics/FUSION_2/chiawei_20240108/20240108_011_autoQC03dia_newEmitter.raw plotClick: p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_024_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 07:31:57.665679 | timeMax: 2024-01-16 07:31:57.666281 | timeDiff: 5184000.00060248 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 06:31:57.666 | timeMax: 2024-01-16 06:31:57.666 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 299 using 'ggh4x' package ... p33961/Proteomics/QEXACTIVE_1/analytic_20240115/20240115_C33961_005_autoQC03dda.raw p33933/Proteomics/QEXACTIVE_1/analytic_20240112/20240112_C33933_007_autoQC03dda.raw p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_011_autoQC03dda.raw NA p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_011_autoQC03dda.raw p33933/Proteomics/QEXACTIVE_1/analytic_20240112/20240112_C33933_007_autoQC03dda.raw autoQC01 module APEX wide nrow: 257147 autoQC01 module APEX long nrow: 756 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 38 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p33961/Proteomics/QEXACTIVE_1/analytic_20240115/20240115_C33961_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 07:50:46.90589 | timeMax: 2024-01-16 07:50:46.906474 | timeDiff: 5184000.00058413 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 06:50:46.906 | timeMax: 2024-01-16 06:50:46.906 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 08:49:03.599867 | timeMax: 2024-01-16 08:49:03.600446 | timeDiff: 5184000.00057864 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 07:49:03.6 | timeMax: 2024-01-16 07:49:03.6 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). p33212/Proteomics/LUMOS_2/cfortes_20240104/20240104_003_autoQC01.raw NA p33726/Proteomics/LUMOS_2/analytic_20240111/20240110_C33726_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33726/Proteomics/LUMOS_2/analytic_20240111/20240110_C33726_005_autoQC01.raw nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 611 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA autoQC01 module APEX wide nrow: 257147 autoQC01 module APEX long nrow: 924 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 28 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p33642/Proteomics/LUMOS_2/analytic_20240110/20240110_C33642_012_autoQC03dda.raw NA p33212/Proteomics/LUMOS_2/cfortes_20240108/20240108_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_2/cfortes_20240108/20240108_004_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 08:50:32.80854 | timeMax: 2024-01-16 08:50:32.80913 | timeDiff: 5184000.00058985 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 07:50:32.809 | timeMax: 2024-01-16 07:50:32.809 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 611 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 08:57:11.849895 | timeMax: 2024-01-16 08:57:11.850495 | timeDiff: 5184000.00060034 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 07:57:11.85 | timeMax: 2024-01-16 07:57:11.85 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 09:00:34.101727 | timeMax: 2024-01-16 09:00:34.102931 | timeDiff: 5184000.00120449 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 09:00:39.28604 | timeMax: 2024-01-16 09:00:39.286877 | timeDiff: 5184000.00083661 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-17 08:00:34.102 | timeMax: 2024-01-16 08:00:34.103 | timeDiff: 5184000.00099993 nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-17 08:00:39.286 | timeMax: 2024-01-16 08:00:39.287 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 09:18:11.544868 | timeMax: 2024-01-16 09:18:11.546312 | timeDiff: 5184000.0014441 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 09:18:18.944316 | timeMax: 2024-01-16 09:18:18.945451 | timeDiff: 5184000.00113463 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-17 08:18:11.545 | timeMax: 2024-01-16 08:18:11.546 | timeDiff: 5184000.00099993 nFacets: 4 input timeRange: 7776000 | timeMin: 2023-11-17 08:18:18.944 | timeMax: 2024-01-16 08:18:18.945 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 09:50:44.508699 | timeMax: 2024-01-16 09:50:44.509289 | timeDiff: 5184000.00059032 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 08:50:44.509 | timeMax: 2024-01-16 08:50:44.509 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... NA vals$rawrr: TRUE p3000/Proteomics/EXPLORIS_2/analytic_20231130/20231130_005_autoQC4L_K562.raw p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231204/20231204_005_autoQC4L_K562.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 10:11:35.62747 | timeMax: 2024-01-16 10:11:35.628054 | timeDiff: 5184000.0005846 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 09:11:35.627 | timeMax: 2024-01-16 09:11:35.628 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20240115/20240115_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/cfortes_20240115/20240115_003_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/cfortes_20240115/20240115_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20240115/20240115_004_autoQC03dia.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20240115/20240115_004_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA vals$rawrr: FALSE vals$rawDiag: TRUE plotChargeState reading index for 20240115_004_autoQC03dia.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. vals$rawrr: TRUE vals$rawDiag: FALSE vals$rawDiag: TRUE vals$rawDiag: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 637 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/cfortes_20240115/20240115_003_autoQC03dda.raw plotClick: NA Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 10:58:30.530163 | timeMax: 2024-01-16 10:58:30.530766 | timeDiff: 5184000.0006032 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-17 09:58:30.53 | timeMax: 2024-01-16 09:58:30.531 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 11:39:32.035749 | timeMax: 2024-01-16 11:39:32.036332 | timeDiff: 5184000.00058317 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2023-11-17 10:39:32.036 | timeMax: 2024-01-16 10:39:32.036 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 13:31:25.937312 | timeMax: 2024-01-16 13:31:25.93793 | timeDiff: 5184000.00061822 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 12:31:25.937 | timeMax: 2024-01-16 12:31:25.938 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240115/20230105_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240115/20230105_003_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240115/20240115_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 13:31:44.637357 | timeMax: 2024-01-16 13:31:44.637974 | timeDiff: 5184000.00061679 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 12:31:44.637 | timeMax: 2024-01-16 12:31:44.638 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 13:34:23.05576 | timeMax: 2024-01-16 13:34:23.056334 | timeDiff: 5184000.00057387 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 12:34:23.056 | timeMax: 2024-01-16 12:34:23.056 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 14:35:31.363393 | timeMax: 2024-01-16 14:35:31.363972 | timeDiff: 5184000.00057912 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-17 14:40:27.316527 | timeMax: 2024-01-16 14:40:27.317104 | timeDiff: 5184000.00057697 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-17 13:40:27.317 | timeMax: 2024-01-16 13:40:27.317 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`).