Listening on http://127.0.0.1:40511

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 08:07:44.196755 | timeMax: 2024-01-19 08:07:44.197666 | timeDiff: 5184000.00091052
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2023-11-20 07:07:44.197 | timeMax: 2024-01-19 07:07:44.198 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1344
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240118_15_autoQC03dda.raw
NA
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 08:37:25.834855 | timeMax: 2024-01-19 08:37:25.835775 | timeDiff: 5184000.00092053
nFacets: 4
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705649839937401000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 08:54:11.616666 | timeMax: 2024-01-19 08:54:11.617549 | timeDiff: 5184000.00088334
nFacets: 4
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705650847576107000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 08:57:27.123687 | timeMax: 2024-01-19 08:57:27.124629 | timeDiff: 5184000.00094175
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1344
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-20 07:57:27.124 | timeMax: 2024-01-19 07:57:27.125 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1344
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705651042731852000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705648059788203000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted