Listening on http://127.0.0.1:35995

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 10:45:18.588111 | timeMax: 2024-01-19 10:45:18.58871 | timeDiff: 5184000.00059891
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-20 09:45:18.588 | timeMax: 2024-01-19 09:45:18.589 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
vals$rawrr: TRUE
p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240118_14_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240118_14_autoQC01.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240118_14_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240118_14_autoQC01.raw
plotClick: 
plotClick: 
plotClick: 
plotClick: 
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 11:54:04.307523 | timeMax: 2024-01-19 11:54:04.308464 | timeDiff: 5184000.0009408
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-20 10:54:04.308 | timeMax: 2024-01-19 10:54:04.308 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705661640484619000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 14:20:45.871806 | timeMax: 2024-01-19 14:20:45.872367 | timeDiff: 5184000.00056124
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-20 13:20:45.872 | timeMax: 2024-01-19 13:20:45.872 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705670442619025000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-20 15:26:33.935347 | timeMax: 2024-01-19 15:26:33.935924 | timeDiff: 5184000.00057697
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-11-20 14:26:33.935 | timeMax: 2024-01-19 14:26:33.936 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705674390889900000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705657512418704000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted