Listening on http://127.0.0.1:46751

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-01 19:32:36.655642 | timeMax: 2024-01-30 19:32:36.656232 | timeDiff: 5184000.00059009
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1216
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-01 18:32:36.656 | timeMax: 2024-01-30 18:32:36.656 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1216
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 0
nFacets: 0
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 720
using 'ggh4x' package ...
NA
p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_001_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_001_autoQC03dia.d.zip
NA
p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_001_autoQC03dia.d.zip
plotClick: 
plotClick: 
NA
p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_001_autoQC03dia.d.zip
plotClick: 
plotClick: 
NA
p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_001_autoQC03dia.d.zip
plotClick: 
vals$rawDiag: TRUE
NA
p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_001_autoQC03dia.d.zip
plotClick: 
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1706639552862602000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted
Warning message:
agg could not write to the given file