Listening on http://127.0.0.1:40977
Loading required package: readr
Loading required package: reshape2
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-02 07:49:09.440785 | timeMax: 2024-01-31 07:49:09.441368 | timeDiff: 5184000.00058293
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-12-02 06:49:09.441 | timeMax: 2024-01-31 06:49:09.441 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 0
nFacets: 4
nrow dataFiltered(): 1520
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 936
using 'ggh4x' package ...
p34067/Proteomics/LUMOS_1/vismi_20240130/20240130_009_autoQC03dda.raw
NA
NA
p34007/Proteomics/LUMOS_1/roschi_20240123_YEAST_DIA/20240123_015_autoQC03dia.raw
NA
p34007/Proteomics/LUMOS_1/roschi_20240129_YEAST_DIA_insol/20240129_015_autoQC03dia.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-02 09:48:36.883699 | timeMax: 2024-01-31 09:48:36.884283 | timeDiff: 5184000.00058341
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1216
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-02 08:48:36.884 | timeMax: 2024-01-31 08:48:36.884 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1216
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1520
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1706690913453719000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1706683745522313000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted