Listening on http://127.0.0.1:44405 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-16 11:34:53.83294 | timeMax: 2024-02-14 11:34:53.83353 | timeDiff: 5184000.00058985 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-16 10:34:53.833 | timeMax: 2024-02-14 10:34:53.834 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw NA vals$rawrr: TRUE p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw Reading raw file: /srv/www/htdocs//p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-16 12:03:48.162248 | timeMax: 2024-02-14 12:03:48.16284 | timeDiff: 5184000.00059128 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-16 11:03:48.162 | timeMax: 2024-02-14 11:03:48.163 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-16 12:14:42.833721 | timeMax: 2024-02-14 12:14:42.834341 | timeDiff: 5184000.0006206 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-16 11:14:42.834 | timeMax: 2024-02-14 11:14:42.834 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_006_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1707906890076914000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_008_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-16 13:51:37.786133 | timeMax: 2024-02-14 13:51:37.786744 | timeDiff: 5184000.00061083 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-12-16 12:51:37.786 | timeMax: 2024-02-14 12:51:37.787 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p34218/Proteomics/LUMOS_1/roschi_20240208_yeast_EtOH_highpH_frac/20240208_055_autoQC01.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1707909279542169000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp input timeRange: 7776000 | timeMin: 2024-02-14 12:51:37.787 | timeMax: 2024-02-14 12:51:37.787 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-23 12:51:50.524 | timeMax: 2023-11-23 12:51:50.524 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-23 12:51:50.524 | timeMax: 2024-02-14 12:51:50.52402 | timeDiff: 7171200.00002003 nFacets: 4 nrow dataFiltered(): 2832 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-14 12:51:57.54092 | timeMax: 2024-02-14 12:51:57.54092 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-02-14 12:51:57.541 | timeMax: 2024-02-14 12:51:57.541 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-25 12:52:00.768 | timeMax: 2023-11-25 12:52:00.768 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-02-06 12:52:03.487 | timeMax: 2024-02-06 12:52:03.487 | timeDiff: 0 nFacets: 4 nrow dataFiltered(): 0 Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1707915094718531000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1707908625008661000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Execution halted