Listening on http://127.0.0.1:45711

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-28 17:38:07.091843 | timeMax: 2024-02-26 17:38:07.092557 | timeDiff: 5184000.00071335
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 960
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-28 16:38:07.092 | timeMax: 2024-02-26 16:38:07.093 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 960
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1520
using 'ggh4x' package ...
Warning: Removed 6 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1520
using 'ggh4x' package ...
Warning: Removed 12 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-28 17:46:04.611587 | timeMax: 2024-02-26 17:46:04.612281 | timeDiff: 5184000.00069427
nFacets: 4
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-12-28 16:46:04.612 | timeMax: 2024-02-26 16:46:04.612 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2023-12-17 16:46:05.585 | timeMax: 2024-02-26 16:46:04.612 | timeDiff: 6134399.02699995
nFacets: 4
nrow dataFiltered(): 0
nFacets: 0
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 1044
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2023-12-06 16:46:13.409 | timeMax: 2024-02-26 16:46:04.612 | timeDiff: 7084791.20300007
nFacets: 0
nFacets: 1
nrow dataFiltered(): 1134
using 'ggh4x' package ...
vals$rawrr: TRUE
NA
p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_011_autoQC03dia.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/TIMSTOF_1/rusdo_20240130_/zip/20240130_011_autoQC03dia.d.zip
vals$rawrr: FALSE
plotClick: 
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1708965482635992000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1708965960409095000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted
Warning messages:
1: agg could not write to the given file 
2: agg could not write to the given file