Listening on http://127.0.0.1:37287

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-29 17:35:38.784152 | timeMax: 2024-02-27 17:35:38.784737 | timeDiff: 5184000.00058508
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1552
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-29 16:35:38.784 | timeMax: 2024-02-27 16:35:38.785 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1552
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 2
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 572
using 'ggh4x' package ...
nrow dataFiltered(): 572
using 'ggh4x' package ...
p34351/Proteomics/LUMOS_2/analytic_20240223/20240223_C34351_019_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20240221/20240221_003_autoQC03dia.raw
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-29 17:37:09.930973 | timeMax: 2024-02-27 17:37:09.931558 | timeDiff: 5184000.00058508
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 378
using 'ggh4x' package ...
nrow dataFiltered(): 195
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-29 16:37:09.93097 | timeMax: 2024-02-27 16:37:09.93156 | timeDiff: 5184000.00059009
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 378
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-29 16:37:09.931 | timeMax: 2024-02-27 16:37:09.932 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 195
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 378
using 'ggh4x' package ...
nFacets: 2
nrow dataFiltered(): 572
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
p34351/Proteomics/LUMOS_2/analytic_20240223/20240223_C34351_019_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p34351/Proteomics/LUMOS_2/analytic_20240223/20240223_C34351_019_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709051734946085000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709051826446979000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted