Listening on http://127.0.0.1:37905

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-30 08:37:34.992162 | timeMax: 2024-02-28 08:37:34.992754 | timeDiff: 5184000.00059152
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1040
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-30 07:37:34.992 | timeMax: 2024-02-28 07:37:34.993 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1040
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709105851189949000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-30 08:50:27.02782 | timeMax: 2024-02-28 08:50:27.028411 | timeDiff: 5184000.0005908
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
nFacets: 2
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 676
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-30 07:50:27.02782 | timeMax: 2024-02-28 07:50:27.02841 | timeDiff: 5184000.00058985
nFacets: 2
nrow dataFiltered(): 676
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2023-12-30 07:50:27.028 | timeMax: 2024-02-28 07:50:27.028 | timeDiff: 5184000
nFacets: 2
nrow dataFiltered(): 676
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
NA
nrow dataFiltered(): 676
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1584
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
p34328/Proteomics/LUMOS_2/analytic_20240226/20240226_C34328_001_autoQC01.raw
p34328/Proteomics/LUMOS_2/analytic_20240226/20240226_C34328_005_autoQC01.raw
NA
nFacets: 4
nrow dataFiltered(): 0
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 0
nrow dataFiltered(): 0
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2023-12-07 07:50:28.915 | timeMax: 2024-02-28 07:50:27.028 | timeDiff: 7171198.11300015
nFacets: 0
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 15552000 | timeMin: 2023-12-07 07:50:28.915 | timeMax: 2024-02-28 08:52:21.137815 | timeDiff: 7171312.22281551
nFacets: 0
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 15552000 | timeMin: 2023-12-07 07:50:28.915 | timeMax: 2024-02-28 07:52:21.138 | timeDiff: 7171312.22300005
nFacets: 0
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 15552000 | timeMin: 2023-11-01 07:52:21.875 | timeMax: 2024-02-28 07:52:21.138 | timeDiff: 10281599.263
nFacets: 0
nFacets: 1
nrow dataFiltered(): 0
nFacets: 5
nFacets: 1
nrow dataFiltered(): 648
using 'ggh4x' package ...
nrow dataFiltered(): 2366
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709106623607276000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted
Warning messages:
1: agg could not write to the given file 
2: agg could not write to the given file