Listening on http://127.0.0.1:39291

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-01 10:07:06.608565 | timeMax: 2024-03-01 10:07:06.609154 | timeDiff: 5184000.00058913
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-01 09:07:06.609 | timeMax: 2024-03-01 09:07:06.609 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
nFacets: 4
nrow dataFiltered(): 1616
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
p34204/Proteomics/LUMOS_2/analytic_20240214/20240214_C34204_001_autoQC01.raw
p34192/Proteomics/LUMOS_2/analytic_20240208/20240208_C34192_045_autoQC01.raw
p34192/Proteomics/LUMOS_2/analytic_20240208/20240208_C34192_056_autoQC01.raw
NA
nFacets: 2
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 676
using 'ggh4x' package ...
NA
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-01 12:13:32.979327 | timeMax: 2024-03-01 12:13:32.979913 | timeDiff: 5184000.00058579
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-01 11:13:32.979 | timeMax: 2024-03-01 11:13:32.98 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
nFacets: 4
nrow dataFiltered(): 848
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 299
using 'ggh4x' package ...
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 299
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709291609602380000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-01 14:42:57.124756 | timeMax: 2024-03-01 14:42:57.125327 | timeDiff: 5184000.00057125
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-01 13:42:57.125 | timeMax: 2024-03-01 13:42:57.125 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709300573786470000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-01 15:01:21.344242 | timeMax: 2024-03-01 15:01:21.344817 | timeDiff: 5184000.00057483
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-01 14:01:21.344 | timeMax: 2024-03-01 14:01:21.345 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1616
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
p34328/Proteomics/LUMOS_2/analytic_20240226/20240226_C34328_001_autoQC01.raw
NA
p23078/Proteomics/LUMOS_2/cfortes_20240229/20240229_010_autoQC01.raw
NA
p34155/Proteomics/LUMOS_2/othman_20240214/20240214_001_autoQC01.raw
nFacets: 4
nrow dataFiltered(): 1680
using 'ggh4x' package ...
Warning: Removed 6 rows containing missing values (`geom_point()`).
p34351/Proteomics/LUMOS_1/analytic_20240226/20240226_C34351_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p34351/Proteomics/LUMOS_1/analytic_20240226/20240226_C34351_001_autoQC01.raw
NA
input timeRange: 7776000 | timeMin: 2023-12-14 14:01:22.221 | timeMax: 2024-03-01 14:01:21.345 | timeDiff: 6739199.12400007
nFacets: 4
nrow dataFiltered(): 1936
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-01 16:11:29.934868 | timeMax: 2024-03-01 16:11:29.935432 | timeDiff: 5184000.0005641
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1616
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-01 15:11:29.935 | timeMax: 2024-03-01 15:11:29.935 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1616
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709284022793806000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709305886682403000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709301678014260000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted