Listening on http://127.0.0.1:38805

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-05 09:50:28.983349 | timeMax: 2024-03-05 09:50:28.983937 | timeDiff: 5184000.00058818
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1088
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-05 08:50:28.983 | timeMax: 2024-03-05 08:50:28.984 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1088
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_013_autoQC01.raw
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 360
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw
nFacets: 2
nrow dataFiltered(): 624
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
p34328/Proteomics/LUMOS_2/analytic_20240226/20240226_C34328_006_autoQC03dda.raw
NA
p34328/Proteomics/LUMOS_2/analytic_20240226/20240226_C34328_006_autoQC03dda.raw
nFacets: 4
nrow dataFiltered(): 1504
using 'ggh4x' package ...
Warning: Removed 9 rows containing missing values (`geom_point()`).
plotClick: 
fn has changed to /srv/www/htdocs//NA
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709628625184630000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted