Listening on http://127.0.0.1:35427

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-06 14:18:12.829366 | timeMax: 2024-03-06 14:18:12.829953 | timeDiff: 5184000.00058627
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-06 13:18:12.829 | timeMax: 2024-03-06 13:18:12.83 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
p3000/Proteomics/EXPLORIS_2/spfammatter_20240306/20240306_002_autoQC01.raw
NA
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 360
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/spfammatter_20240306/20240306_002_autoQC01.raw
p3000/Proteomics/EXPLORIS_2/spfammatter_20240306/20240306_002_autoQC01.raw
p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_007_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_2/spfammatter_20240306/20240306_002_autoQC01.raw
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709731089023265000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted