Listening on http://127.0.0.1:40391

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-11 08:13:16.904752 | timeMax: 2024-03-11 08:13:16.905344 | timeDiff: 5184000.00059175
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1104
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-11 07:13:16.905 | timeMax: 2024-03-11 07:13:16.905 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1104
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-11 08:30:59.297722 | timeMax: 2024-03-11 08:30:59.29831 | timeDiff: 5184000.0005877
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 208
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-11 07:30:59.29772 | timeMax: 2024-03-11 07:30:59.29831 | timeDiff: 5184000.00059009
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-11 07:30:59.298 | timeMax: 2024-03-11 07:30:59.298 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
nFacets: 2
nrow dataFiltered(): 598
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710142255865609000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-11 09:57:25.263241 | timeMax: 2024-03-11 09:57:25.263933 | timeDiff: 5184000.00069284
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1120
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-11 08:57:25.263 | timeMax: 2024-03-11 08:57:25.264 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1120
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 6 rows containing missing values (`geom_point()`).
p34484/Proteomics/LUMOS_1/aeberle_20240308/20240308_001_autoQC01.raw
vals$rawrr: TRUE
plotClick: 
fn has changed to /srv/www/htdocs//p34484/Proteomics/LUMOS_1/aeberle_20240308/20240308_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p34484/Proteomics/LUMOS_1/aeberle_20240308/20240308_001_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
p34484/Proteomics/LUMOS_1/aeberle_20240308/20240308_001_autoQC01.raw
p34351/Proteomics/LUMOS_1/analytic_20240226/20240226_C34351_002_autoQC01.raw
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710147441956605000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-11 16:42:01.831325 | timeMax: 2024-03-11 16:42:01.831891 | timeDiff: 5184000.00056601
nFacets: 4
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-11 15:42:01.83132 | timeMax: 2024-03-11 15:42:01.83189 | timeDiff: 5184000.00056982
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-11 15:42:01.831 | timeMax: 2024-03-11 15:42:01.832 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
NA
nFacets: 2
nrow dataFiltered(): 546
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 252
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710171718762499000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-11 16:48:22.901361 | timeMax: 2024-03-11 16:48:22.901929 | timeDiff: 5184000.0005672
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1120
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-11 15:48:22.901 | timeMax: 2024-03-11 15:48:22.902 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1120
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_002_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_002_autoQC01.raw
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/analytic_202403011/20240311_001_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_2/analytic_202403011/20240311_001_autoQC03dda.raw
NA
p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw
NA
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710141193144931000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710172099598701000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted