Listening on http://127.0.0.1:32817

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 08:55:56.001908 | timeMax: 2024-03-18 08:55:56.002495 | timeDiff: 5184000.00058699
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1632
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 07:55:56.002 | timeMax: 2024-03-18 07:55:56.002 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1632
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-01 07:55:58.106 | timeMax: 2024-03-18 07:55:56.002 | timeDiff: 6652797.89600015
nFacets: 4
nrow dataFiltered(): 2064
using 'ggh4x' package ...
Warning: Removed 14 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 09:11:35.924055 | timeMax: 2024-03-18 09:11:35.924643 | timeDiff: 5184000.0005877
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 08:11:35.924 | timeMax: 2024-03-18 08:11:35.925 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  218: vapply
  217: FUN
  216: lapply
  213: .getChildInstruments
  212: .composeInstrumentEvents
  211: <reactive>
  209: .func
  206: contextFunc
  205: env$runWith
  198: ctx$run
  197: self$.updateValue
  195: bfabricInstrumentEvents
  188: <reactive>
  186: .func
  183: contextFunc
  182: env$runWith
  175: ctx$run
  174: self$.updateValue
  172: BFabric$bfabricInstrumentEventsFiltered
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  100: <Anonymous>
   99: stop
   98: BFabric$bfabricInstrumentEventsFiltered
   97: renderUI
   96: func
   83: renderFunc
   82: output$__autoQC01__-instrumentEvents
    1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710748552102515000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 10:38:46.800721 | timeMax: 2024-03-18 10:38:46.801331 | timeDiff: 5184000.00060987
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 09:38:46.801 | timeMax: 2024-03-18 09:38:46.801 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1856
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
NA
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710754723621930000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 14:23:02.621738 | timeMax: 2024-03-18 14:23:02.622323 | timeDiff: 5184000.00058436
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 13:23:02.622 | timeMax: 2024-03-18 13:23:02.622 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
NA
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710768179228378000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 15:34:25.464237 | timeMax: 2024-03-18 15:34:25.465344 | timeDiff: 5184000.00110745
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 14:34:25.464 | timeMax: 2024-03-18 14:34:25.465 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240313/20240313_013_autoQC01.raw
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710772460522925000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 15:40:58.618015 | timeMax: 2024-03-18 15:40:58.618604 | timeDiff: 5184000.00058913
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 14:40:58.618 | timeMax: 2024-03-18 14:40:58.619 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710772855264654000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 15:41:32.083828 | timeMax: 2024-03-18 15:41:32.084398 | timeDiff: 5184000.00056934
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 14:41:32.084 | timeMax: 2024-03-18 14:41:32.084 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 15:41:43.440027 | timeMax: 2024-03-18 15:41:43.440595 | timeDiff: 5184000.00056863
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 14:41:43.44 | timeMax: 2024-03-18 14:41:43.441 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710772889042930000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 15:43:18.877153 | timeMax: 2024-03-18 15:43:18.87773 | timeDiff: 5184000.00057721
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 14:43:18.877 | timeMax: 2024-03-18 14:43:18.878 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710772995604048000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710772900367844000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 16:24:18.18339 | timeMax: 2024-03-18 16:24:18.183968 | timeDiff: 5184000.00057864
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 15:24:18.183 | timeMax: 2024-03-18 15:24:18.184 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1200
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 16:25:05.730827 | timeMax: 2024-03-18 16:25:05.731409 | timeDiff: 5184000.00058222
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 15:25:05.731 | timeMax: 2024-03-18 15:25:05.731 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 720
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 286
using 'ggh4x' package ...
p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240313/20240313_014_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710775455063801000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710775502693512000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 17:16:26.548023 | timeMax: 2024-03-18 17:16:26.548592 | timeDiff: 5184000.00056839
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 16:16:26.548 | timeMax: 2024-03-18 16:16:26.549 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 286
using 'ggh4x' package ...
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 17:19:35.944183 | timeMax: 2024-03-18 17:19:35.944757 | timeDiff: 5184000.00057364
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-18 16:19:35.944 | timeMax: 2024-03-18 16:19:35.945 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 286
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710778583498647000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-18 17:23:03.524197 | timeMax: 2024-03-18 17:23:03.524772 | timeDiff: 5184000.00057507
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 286
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-18 16:23:03.5242 | timeMax: 2024-03-18 16:23:03.52477 | timeDiff: 5184000.00057006
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 144
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-18 16:23:03.524 | timeMax: 2024-03-18 16:23:03.525 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 144
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710778772864380000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
NA
p24073/Proteomics/EXPLORIS_1/wilkin_20240312_20240312_swBOOZE_TUBI/20240312_012_autoQC03dda.raw
nrow dataFiltered(): 286
using 'ggh4x' package ...
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-19 09:06:12.363454 | timeMax: 2024-03-19 09:06:12.364658 | timeDiff: 5184000.00120378
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1328
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-19 08:06:12.363 | timeMax: 2024-03-19 08:06:12.365 | timeDiff: 5184000.00200009
nFacets: 4
nrow dataFiltered(): 1328
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710835568327381000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Error in $: $ operator is invalid for atomic vectors
  174: <Anonymous>
  173: stop
  172: BFabric$bfabricInstrumentEventsFiltered
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-19 11:17:36.365639 | timeMax: 2024-03-19 11:17:36.366695 | timeDiff: 5184000.00105524
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-01-19 10:17:36.366 | timeMax: 2024-03-19 10:17:36.367 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710749492467234000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240313/20240313_014_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240313/20240313_014_autoQC03dda.raw
NA
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-19 12:15:56.747434 | timeMax: 2024-03-19 12:15:56.748291 | timeDiff: 5184000.00085688
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 286
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-19 11:15:56.74743 | timeMax: 2024-03-19 11:15:56.74829 | timeDiff: 5184000.00086021
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 144
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-19 11:15:56.747 | timeMax: 2024-03-19 11:15:56.748 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 144
using 'ggh4x' package ...
NA
NA
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710778980216666000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp