Listening on http://127.0.0.1:40131 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-21 23:13:33.451937 | timeMax: 2024-03-21 23:13:33.452518 | timeDiff: 5184000.0005815 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-21 22:13:33.452 | timeMax: 2024-03-21 22:13:33.453 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1920 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). NA p34029/Proteomics/LUMOS_1/analytic_20240123/20240123_C34029_007_autoQC01.raw NA p34007/Proteomics/LUMOS_1/roschi_20240129_YEAST_DIA_insol/20240129_001_autoQC01.raw vals$rawrr: TRUE vals$rawDiag: TRUE NA p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_008_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_008_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240320_008_autoQC01.raw... reading took13.674seconds p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_008_autoQC01.raw NA p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_001_autoQC01.raw p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_009_autoQC01.raw p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_005_autoQC01.raw p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_009_autoQC01.raw NA p30646/Proteomics/LUMOS_1/gnarduzzi_20240205/20240205_001_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240206_Dimethylation/20240207_32_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240206_Dimethylation/20240207_32_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-22 02:10:47.37805 | timeMax: 2024-03-22 02:10:47.378627 | timeDiff: 5184000.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1936 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-22 01:10:47.378 | timeMax: 2024-03-22 01:10:47.379 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1936 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). NA vals$rawrr: TRUE vals$rawDiag: TRUE p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_011_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_011_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240320_011_autoQC01.raw... reading took11.009seconds NA Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file