Listening on http://127.0.0.1:44209 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-25 12:18:55.722503 | timeMax: 2024-03-25 12:18:55.723089 | timeDiff: 5184000.00058532 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 848 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-25 11:18:55.723 | timeMax: 2024-03-25 11:18:55.723 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 848 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1776 using 'ggh4x' package ... Warning: Removed 28 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-25 12:19:59.106886 | timeMax: 2024-03-25 12:19:59.107481 | timeDiff: 5184000.00059509 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1776 using 'ggh4x' package ... Warning: Removed 28 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-25 11:19:59.107 | timeMax: 2024-03-25 11:19:59.107 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1776 using 'ggh4x' package ... Warning: Removed 28 rows containing missing values (`geom_point()`). p34704/Proteomics/QEXACTIVE_1/analytic_20240322/20240322_C34704_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34704/Proteomics/QEXACTIVE_1/analytic_20240322/20240322_C34704_013_autoQC01.raw NA p34704/Proteomics/QEXACTIVE_1/analytic_20240322/20240322_C34704_013_autoQC01.raw plotClick: nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 455 using 'ggh4x' package ... NA p34704/Proteomics/QEXACTIVE_1/analytic_20240322/20240322_C34704_014_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-25 12:55:26.283521 | timeMax: 2024-03-25 12:55:26.284118 | timeDiff: 5184000.00059652 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1760 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-25 11:55:26.284 | timeMax: 2024-03-25 11:55:26.284 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1760 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 828 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... NA NA p29033/Proteomics/TIMSTOF_1/radhika_20240223_prihepatocytes_DIA_DDA/zip/20240223_037_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p29033/Proteomics/TIMSTOF_1/radhika_20240223_prihepatocytes_DIA_DDA/zip/20240223_037_autoQC03dia.d.zip NA p29033/Proteomics/TIMSTOF_1/radhika_20240223_prihepatocytes_DIA_DDA/zip/20240223_073_autoQC03dia.d.zip NA p34066/Proteomics/TIMSTOF_1/spfammatter_20240205/zip/20240205_002_autoQC03dia.d.zip NA p34113/Proteomics/TIMSTOF_1/egaehw_20240209_/zip/20240209_001_autoQC03dia.d.zip NA p34113/Proteomics/TIMSTOF_1/egaehw_20240209_/zip/20240209_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34113/Proteomics/TIMSTOF_1/egaehw_20240209_/zip/20240209_001_autoQC03dia.d.zip NA p34113/Proteomics/TIMSTOF_1/egaehw_20240209_/zip/20240209_007_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34113/Proteomics/TIMSTOF_1/egaehw_20240209_/zip/20240209_007_autoQC03dia.d.zip p23811/Proteomics/TIMSTOF_1/brzobohata_20240214_GLODprot/zip/20240215_002_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p23811/Proteomics/TIMSTOF_1/brzobohata_20240214_GLODprot/zip/20240215_002_autoQC03dia.d.zip NA p23811/Proteomics/TIMSTOF_1/brzobohata_20240214_GLODprot/zip/20240215_068_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p23811/Proteomics/TIMSTOF_1/brzobohata_20240214_GLODprot/zip/20240215_068_autoQC03dia.d.zip NA p23811/Proteomics/TIMSTOF_1/brzobohata_20240214_GLODprot/zip/20240215_134_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p23811/Proteomics/TIMSTOF_1/brzobohata_20240214_GLODprot/zip/20240215_134_autoQC03dia.d.zip NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240207_/zip/20240207_007_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240207_/zip/20240207_007_autoQC03dia.d.zip NA p34575/Proteomics/TIMSTOF_1/analytic_20240320/zip/20240322_C34575_002_autoQC03dia.d.zip NA nrow dataFiltered(): 828 using 'ggh4x' package ... nrow dataFiltered(): 828 using 'ggh4x' package ... p34196/Proteomics/TIMSTOF_1/spfammatter_20240207_/zip/20240207_007_autoQC03dia.d.zip nrow dataFiltered(): 828 using 'ggh4x' package ... p34066/Proteomics/TIMSTOF_1/spfammatter_20240205/zip/20240205_002_autoQC03dia.d.zip NA nrow dataFiltered(): 828 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... nrow dataFiltered(): 828 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-25 16:40:46.88184 | timeMax: 2024-03-25 16:40:46.882407 | timeDiff: 5184000.00056696 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-25 15:40:46.882 | timeMax: 2024-03-25 15:40:46.882 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Execution halted